Searching for up to 100 curated homologs for GFF3216 FitnessBrowser__Marino:GFF3216 (269 a.a.)

Found high-coverage hits (≥70%) to 13 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

TauC / b0367 taurine ABC transporter membrane subunit (EC 7.6.2.7) from Escherichia coli K-12 substr. MG1655 (see 3 papers)
TauC / Q47539 taurine ABC transporter membrane subunit (EC 7.6.2.7) from Escherichia coli (strain K12) (see 2 papers)
TAUC_ECOLI / Q47539 Taurine transport system permease protein TauC from Escherichia coli (strain K12) (see paper)
TC 3.A.1.17.1 / Q47539 TauC aka SSIC aka B0367, component of Taurine (2-aminoethane sulfonate) porter from Escherichia coli (see 4 papers)
    38% identity, 74% coverage of query (115 bits)

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Build an alignment for GFF3216 and 1 homologs with ≥ 30% identity

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Additional hits (identity < 30%)

TC 3.A.1.17.2 / O85765 SsuC, component of Aromatic sulfonate porter from Pseudomonas putida (see paper)
    28% identity, 76% coverage of query (85.1 bits)

CMPB_SYNE7 / Q55106 Bicarbonate transport system permease protein CmpB from Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805) (Anacystis nidulans R2) (see paper)
TC 3.A.1.16.3 / Q55106 CmpB, component of Bicarbonate porter (activated by low [CO2] mediated by CmpR; (Nishimura et al., 2008)) (see 2 papers)
    29% identity, 91% coverage of query (82.4 bits)

Ac3H11_2561 ABC transporter for L-Histidine, permease component 2 from Acidovorax sp. GW101-3H11
    30% identity, 74% coverage of query (80.5 bits)

TC 3.A.1.17.4 / Q2BM70 Putative taurine uptake ABC transporter permease protein, component of The taurine uptake system, TauABC from Neptuniibacter caesariensis
    31% identity, 72% coverage of query (80.1 bits)

AO356_09615 ABC transporter for L-Histidine, permease component from Pseudomonas fluorescens FW300-N2C3
    27% identity, 71% coverage of query (60.5 bits)

OPUCB_LISM4 / G2JZ43 Carnitine transport permease protein OpuCB from Listeria monocytogenes serotype 1/2a (strain 10403S) (see 4 papers)
OPUCB_LISMN / Q9KHT8 Carnitine transport permease protein OpuCB from Listeria monocytogenes (see paper)
    29% identity, 76% coverage of query (58.5 bits)

TC 3.A.1.17.5 / C0LZR8 OphG, component of The phthalate uptake system, OphFGH from Burkholderia cepacia
    25% identity, 72% coverage of query (50.4 bits)

TC 3.A.1.12.7 / Q92N36 ChoW, component of High affinity (3 μM) choline-specific uptake system from Rhizobium meliloti (Sinorhizobium meliloti) (see 2 papers)
    23% identity, 70% coverage of query (49.7 bits)

AO353_07785 ABC transporter for Carnitine, permease component from Pseudomonas fluorescens FW300-N2E3
    21% identity, 71% coverage of query (45.8 bits)

Pf6N2E2_4682 ABC transporter for Carnitine, permease component from Pseudomonas fluorescens FW300-N2E2
    21% identity, 71% coverage of query (45.8 bits)

OPUBB_BACSU / Q45461 Choline transport system permease protein OpuBB from Bacillus subtilis (strain 168) (see 2 papers)
TC 3.A.1.12.3 / Q45461 OPBB aka OpuBB aka PROW, component of Choline porter from Bacillus subtilis (see 3 papers)
    25% identity, 73% coverage of query (45.4 bits)

AO356_13810 ABC transporter for Carnitine, permease component from Pseudomonas fluorescens FW300-N2C3
    21% identity, 71% coverage of query (45.4 bits)

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