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Searching for up to 100 curated homologs for GFF3395 FitnessBrowser__WCS417:GFF3395 (175 a.a.)

Found high-coverage hits (≥70%) to 2 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

PP_1168 D-glucuronate / D-galacturonate TRAP transporter, small permease component from Pseudomonas putida KT2440
    71% identity, 100% coverage of query (264 bits)

Build an alignment

Build an alignment for GFF3395 and 1 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

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Change minimum %identity:

Additional hits (identity < 30%)

SIAQ_VIBCH / Q9KR65 Sialic acid TRAP transporter small permease protein SiaQ from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (see 2 papers)
TC 2.A.56.1.6 / B9TSN0 TRAP-type C4-dicarboxylate transport system small permease component, component of The Na+-dependent sialic acid uptake porter, SiaPQM. SiaQ and SiaM form a 1:1 stoichiometric complex from Vibrio cholerae (see paper)
    28% identity, 80% coverage of query (47.0 bits)

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory