Searching for up to 100 curated homologs for GFF340 FitnessBrowser__WCS417:GFF340 (321 a.a.)

Found high-coverage hits (≥70%) to 15 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

AO356_09620 ABC transporter for L-Histidine, periplasmic substrate-binding component from Pseudomonas fluorescens FW300-N2C3
    94% identity, 100% coverage of query (590 bits)

TC 3.A.1.12.6 / Q9KKE3 HutX aka HISX, component of Uptake system for hisitidine, proline, proline-betaine and glycine-betaine from Rhizobium meliloti (Sinorhizobium meliloti) (see paper)
    49% identity, 100% coverage of query (340 bits)

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Build an alignment for GFF340 and 2 homologs with ≥ 30% identity

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Additional hits (identity < 30%)

7yleA / A3SME7 Rndmpx in complex with dmsp (see paper)
    23% identity, 90% coverage of query (99.0 bits)

A0A077T7U5 ABC-type quaternary amine transporter (subunit 2/3) (EC 7.6.2.9) from Vibrio anguillarum serotype O1 (see paper)
    26% identity, 93% coverage of query (68.2 bits)

TC 3.A.1.12.12 / Q9HTI6 Putative uncharacterized protein, component of The CbcWV/CbcX (choline)/CaiX (carnitine)/BetX (betaine) transporter with 3 binding receptors for distinct quaternary ammonium compounds. Only the ligand-bound receptor binds to the transporter with high affinity from Pseudomonas aeruginosa (see paper)
    24% identity, 93% coverage of query (67.8 bits)

A0A077T7R8 ABC-type quaternary amine transporter (subunit 1/2) (EC 7.6.2.9) from Vibrio anguillarum serotype O1 (see paper)
    23% identity, 96% coverage of query (59.3 bits)

TC 3.A.1.12.12 / Q9HTH6 Putative uncharacterized protein, component of The CbcWV/CbcX (choline)/CaiX (carnitine)/BetX (betaine) transporter with 3 binding receptors for distinct quaternary ammonium compounds. Only the ligand-bound receptor binds to the transporter with high affinity from Pseudomonas aeruginosa (see paper)
    22% identity, 95% coverage of query (51.2 bits)

TMOX_RUEPO / Q5LT66 Trimethylamine N-oxide-binding protein; TMAO-binding protein from Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (Silicibacter pomeroyi) (see 2 papers)
    23% identity, 97% coverage of query (50.4 bits)

OUSX_DICD3 / E0SCY3 Glycine betaine-binding periplasmic protein OusX from Dickeya dadantii (strain 3937) (Erwinia chrysanthemi (strain 3937)) (see paper)
    22% identity, 96% coverage of query (50.1 bits)

AO356_13815 ABC transporter for Carnitine, periplasmic substrate-binding component 1 from Pseudomonas fluorescens FW300-N2C3
    22% identity, 95% coverage of query (50.1 bits)

TC 3.A.1.12.7 / Q8RPR1 ChoX, component of High affinity (3 μM) choline-specific uptake system from Rhizobium meliloti (Sinorhizobium meliloti) (see paper)
    23% identity, 96% coverage of query (49.7 bits)

4xz6A / Q5LT66 Tmox in complex with tmao (see paper)
    21% identity, 88% coverage of query (48.5 bits)

2regA / Q92N37 Abc-transporter choline binding protein in complex with choline (see paper)
    23% identity, 89% coverage of query (46.2 bits)

2rinA Abc-transporter choline binding protein in complex with acetylcholine
    23% identity, 89% coverage of query (46.2 bits)

TMOX_PELUB / Q4FL33 Trimethylamine N-oxide-binding protein; TMAO-binding protein from Pelagibacter ubique (strain HTCC1062) (see paper)
    23% identity, 95% coverage of query (43.1 bits)

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