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Searching for up to 100 curated homologs for GFF3452 FitnessBrowser__psRCH2:GFF3452 (1156 a.a.)

Found high-coverage hits (≥70%) to 6 curated proteins.

Removed hits that are identical to the query, leaving 5

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

RR42_RS19540 branched-chain alpha-ketoacid:ferredoxin oxidoreductase, fused (EC 1.2.7.7) from Cupriavidus basilensis FW507-4G11
    55% identity, 99% coverage of query (1268 bits)

RR42_RS34245 branched-chain alpha-ketoacid:ferredoxin oxidoreductase, fused from Cupriavidus basilensis FW507-4G11
    57% identity, 97% coverage of query (1254 bits)

BPHYT_RS02015 phenylpyruvate ferredoxin oxidoreductase (EC 1.2.7.8) from Burkholderia phytofirmans PsJN
    49% identity, 99% coverage of query (1091 bits)

HP15_859 phenylpyruvate ferredoxin oxidoreductase (EC 1.2.7.8) from Marinobacter adhaerens HP15
    49% identity, 99% coverage of query (1089 bits)

salQ / B0L7F0 5-chloro-4-hydroxy-2-oxopentanoate decarboxylase (acylating) from Salinispora tropica (see paper)
    40% identity, 98% coverage of query (714 bits)

Build an alignment

Build an alignment for GFF3452 and 5 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory