Searching for up to 100 curated homologs for GFF3464 FitnessBrowser__WCS417:GFF3464 (307 a.a.)
Found high-coverage hits (≥70%) to 66 curated proteins.
You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.
2ioyA / Q8RD41 Crystal structure of thermoanaerobacter tengcongensis ribose binding protein (see paper)
40% identity, 86% coverage of query (188 bits)
RBSB_BACSU / P36949 Ribose import binding protein RbsB from Bacillus subtilis (strain 168) (see 2 papers)
37% identity, 91% coverage of query (170 bits)
5dteB / A6VKG5 Crystal structure of an abc transporter periplasmic solute binding protein (ipr025997) from actinobacillus succinogenes 130z(asuc_0081, target efi-511065) with bound d-allose
36% identity, 90% coverage of query (147 bits)
TC 3.A.1.2.13 / A6VKT0 RbsB, component of The probable autoinducer-2 (AI-2;, a furanosyl borate diester: 3aS,6S,6aR)-2,2,6,6a-tetrahydroxy-3a-methyltetrahydrofuro[3,2-d][1,3,2]dioxaborolan-2-uide) uptake porter (Shao et al., 2007) (50-70% identical to RbsABC of E. coli; TC# 3.A.1.2.1) from Actinobacillus succinogenes (strain ATCC 55618 / 130Z)
34% identity, 96% coverage of query (147 bits)
RbsB / b3751 ribose ABC transporter periplasmic binding protein from Escherichia coli K-12 substr. MG1655 (see 25 papers)
RbsB / P02925 ribose ABC transporter periplasmic binding protein from Escherichia coli (strain K12) (see 25 papers)
RBSB_ECOLI / P02925 Ribose import binding protein RbsB from Escherichia coli (strain K12) (see 5 papers)
TC 3.A.1.2.1 / P02925 RbsB aka RBSP aka PRLB aka B3751, component of Ribose porter from Escherichia coli (see 11 papers)
rbsB / GB|AAC76774.1 D-ribose-binding periplasmic protein; EC 3.6.3.17 from Escherichia coli K12 (see 11 papers)
36% identity, 96% coverage of query (147 bits)
1dbpA / P02925 Identical mutations at corresponding positions in two homologous proteins with non-identical effects (see paper)
37% identity, 84% coverage of query (145 bits)
4zjpA / A6VKT0 Structure of an abc-transporter solute binding protein (sbp_ipr025997) from actinobacillus succinogenes (asuc_0197, target efi-511067) with bound beta-d-ribopyranose
34% identity, 87% coverage of query (145 bits)
7e7mC / Q8E283 Crystal structure analysis of the streptococcus agalactiae ribose binding protein rbsb
32% identity, 92% coverage of query (136 bits)
HSERO_RS03635 D-mannose ABC transporter, substrate-binding component from Herbaspirillum seropedicae SmR1
37% identity, 82% coverage of query (135 bits)
TC 3.A.1.2.19 / Q9X053 Periplasmic binding protein/LacI transcriptional regulator, component of D-ribose porter (Nanavati et al., 2006). Induced by ribose from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
32% identity, 84% coverage of query (132 bits)
2fn8A / Q9X053 Thermotoga maritima ribose binding protein ribose bound form (see paper)
32% identity, 84% coverage of query (132 bits)
TC 3.A.1.2.21 / B8H228 Inositol ABC transporter, periplasmic inositol-binding protein IbpA, component of The myoinositol (high affinity)/ D-ribose (low affinity) transporter IatP/IatA/IbpA. The structure of IbpA with myoinositol bound has been solved from Caulobacter crescentus (strain NA1000 / CB15N)
33% identity, 78% coverage of query (121 bits)
4irxA / A0A0H3C834 Crystal structure of caulobacter myo-inositol binding protein bound to myo-inositol (see paper)
33% identity, 78% coverage of query (121 bits)
PS417_11885 Inositol transport system sugar-binding protein from Pseudomonas simiae WCS417
31% identity, 81% coverage of query (119 bits)
RR42_RS03370 fructose ABC transporter, substrate-binding component (FrcB) from Cupriavidus basilensis FW507-4G11
35% identity, 90% coverage of query (119 bits)
PS417_12055 xylitol ABC transporter, substrate-binding component from Pseudomonas simiae WCS417
30% identity, 83% coverage of query (109 bits)
THPA_MYCS2 / A0QYB5 D-threitol-binding protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium smegmatis) (see paper)
30% identity, 88% coverage of query (108 bits)
4rsmA / A0QYB5 Crystal structure of carbohydrate transporter msmeg_3599 from mycobacterium smegmatis str. Mc2 155, target efi-510970, in complex with d-threitol (see paper)
31% identity, 81% coverage of query (107 bits)
XYPA_MYCS2 / A0QYB3 Xylitol-binding protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium smegmatis) (see paper)
31% identity, 81% coverage of query (103 bits)
4rs3A / A0QYB3 Crystal structure of carbohydrate transporter a0qyb3 from mycobacterium smegmatis str. Mc2 155, target efi-510969, in complex with xylitol (see paper)
31% identity, 81% coverage of query (103 bits)
5hkoA Crystal structure of abc transporter solute binding protein msmeg_3598 from mycobacterium smegmatis str. Mc2 155, target efi-510969, in complex with l-sorbitol
31% identity, 81% coverage of query (103 bits)
Build an alignment for GFF3464 and 21 homologs with ≥ 30% identity
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4yo7A / Q9KAG4 Crystal structure of an abc transporter solute binding protein (ipr025997) from bacillus halodurans c-125 (bh2323, target efi- 511484) with bound myo-inositol
27% identity, 85% coverage of query (101 bits)
AlsB / b4088 D-allose ABC transporter periplasmic binding protein (EC 7.5.2.8) from Escherichia coli K-12 substr. MG1655 (see 5 papers)
AlsB / P39265 D-allose ABC transporter periplasmic binding protein (EC 7.5.2.8) from Escherichia coli (strain K12) (see 5 papers)
ALSB_ECOLI / P39265 D-allose-binding periplasmic protein; ALBP from Escherichia coli (strain K12) (see paper)
P39265 ABC-type D-allose transporter (EC 7.5.2.8) from Escherichia coli (see paper)
TC 3.A.1.2.6 / P39265 AlsB aka B4088, component of D-allose porter from Escherichia coli (see 6 papers)
alsB / GB|AAC77049.1 D-allose-binding periplasmic protein; EC 3.6.3.17 from Escherichia coli K12 (see 6 papers)
29% identity, 93% coverage of query (97.4 bits)
4ry9A / A1WJM2 Crystal structure of carbohydrate transporter solute binding protein veis_2079 from verminephrobacter eiseniae ef01-2, target efi-511009, a complex with d-talitol
31% identity, 86% coverage of query (96.7 bits)
1gudA / P39265 Hinge-bending motion of d-allose binding protein from escherichia coli: three open conformations (see paper)
29% identity, 85% coverage of query (96.7 bits)
4ry9B Crystal structure of carbohydrate transporter solute binding protein veis_2079 from verminephrobacter eiseniae ef01-2, target efi-511009, a complex with d-talitol
31% identity, 86% coverage of query (96.7 bits)
1rpjA Crystal structure of d-allose binding protein from escherichia coli
29% identity, 85% coverage of query (96.7 bits)
HSERO_RS11480 D-ribose ABC transporter, substrate-binding component RbsB from Herbaspirillum seropedicae SmR1
31% identity, 82% coverage of query (96.3 bits)
RALBP_PSEAE / Q9I2F8 D-ribose/D-allose-binding protein from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
30% identity, 91% coverage of query (96.3 bits)
8wlbA X-ray structure of enterobacter cloacae allose-binding protein in complex with d-psicose
29% identity, 85% coverage of query (94.7 bits)
8wl9A X-ray structure of enterobacter cloacae allose-binding protein in complex with d-ribose
29% identity, 85% coverage of query (94.7 bits)
APIBP_RHIR8 / B9JK76 D-apiose import binding protein; D-apiose binding SBP from Rhizobium rhizogenes (strain K84 / ATCC BAA-868) (Agrobacterium radiobacter) (see paper)
28% identity, 84% coverage of query (86.7 bits)
Pf1N1B4_6035 D-ribose ABC transporter, substrate-binding component RbsB from Pseudomonas fluorescens FW300-N1B4
28% identity, 83% coverage of query (85.5 bits)
2rjoA / B2TEP5 Crystal structure of twin-arginine translocation pathway signal protein from burkholderia phytofirmans
26% identity, 72% coverage of query (84.3 bits)
2h3hA / Q9WXW9 Crystal structure of the liganded form of thermotoga maritima glucose binding protein (see paper)
27% identity, 79% coverage of query (82.4 bits)
Shewana3_2073 L-arabinose ABC transporter, substrate-binding component AraU from Shewanella sp. ANA-3
28% identity, 79% coverage of query (80.9 bits)
3c6qC Apo and ligand-bound form of a thermophilic glucose/xylose binding protein
27% identity, 79% coverage of query (80.1 bits)
APIBP_PARG4 / B1G898 D-apiose import binding protein; D-apiose binding SBP from Paraburkholderia graminis (strain ATCC 700544 / DSM 17151 / LMG 18924 / NCIMB 13744 / C4D1M) (see paper)
28% identity, 82% coverage of query (78.6 bits)
APIBP_RHIEC / Q2JZQ5 D-apiose import binding protein; D-apiose binding SBP from Rhizobium etli (strain CFN 42 / ATCC 51251) (see paper)
26% identity, 82% coverage of query (77.0 bits)
FRCB_RHIML / Q9F9B2 Fructose import binding protein FrcB from Rhizobium meliloti (Ensifer meliloti) (Sinorhizobium meliloti) (see paper)
TC 3.A.1.2.7 / Q9F9B2 FrcB, component of Fructose/mannose/ribose porter from Rhizobium meliloti (Sinorhizobium meliloti) (see paper)
28% identity, 85% coverage of query (76.3 bits)
TC 3.A.1.2.11 / Q92WK4 EryG aka RB0335, component of The erythritol permease, EryEFG (Geddes et al., 2010) (probably orthologous to 3.A.1.2.16) from Rhizobium meliloti (Sinorhizobium meliloti) (see paper)
26% identity, 71% coverage of query (75.9 bits)
4rxmA Crystal structure of periplasmic abc transporter solute binding protein a7jw62 from mannheimia haemolytica phl213, target efi-511105, in complex with myo-inositol
27% identity, 78% coverage of query (75.1 bits)
4rxmB Crystal structure of periplasmic abc transporter solute binding protein a7jw62 from mannheimia haemolytica phl213, target efi-511105, in complex with myo-inositol
27% identity, 78% coverage of query (75.1 bits)
TC 3.A.1.2.24 / O50503 Solute-binding protein, component of XylFGH downstream of characterized transcriptional regulator, ROK7B7 (Sco6008); XylF (Sco6009); XylG (Sco6010); XylH (Sco6011)) from Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
24% identity, 71% coverage of query (73.9 bits)
5ibqA / Q2JZQ5 Crystal structure of an abc solute binding protein from rhizobium etli cfn 42 (rhe_pf00037,target efi-511357) in complex with alpha-d-apiose
25% identity, 75% coverage of query (73.6 bits)
4ry0A Crystal structure of ribose transporter solute binding protein rhe_pf00037 from rhizobium etli cfn 42, target efi-511357, in complex with d-ribose
25% identity, 75% coverage of query (73.6 bits)
APIBP_ACTSZ / A6VKQ8 D-apiose import binding protein; D-apiose binding SBP from Actinobacillus succinogenes (strain ATCC 55618 / DSM 22257 / CCUG 43843 / 130Z) (see paper)
27% identity, 100% coverage of query (72.8 bits)
5dkvA / B9K0T2 Crystal structure of an abc transporter solute binding protein from agrobacterium vitis(avis_5339, target efi-511225) bound with alpha-d- tagatopyranose
27% identity, 75% coverage of query (72.0 bits)
YtfQ / b4227 galactofuranose ABC transporter periplasmic binding protein (EC 7.5.2.9) from Escherichia coli K-12 substr. MG1655 (see 3 papers)
YtfQ / P39325 galactofuranose ABC transporter periplasmic binding protein (EC 7.5.2.9) from Escherichia coli (strain K12) (see 3 papers)
YTFQ_ECOLI / P39325 Galactofuranose-binding protein YtfQ from Escherichia coli (strain K12) (see paper)
P39325 ABC-type D-galactofuranose transporter (EC 7.5.2.9) from Escherichia coli (see paper)
26% identity, 72% coverage of query (70.5 bits)
2vk2A / P39325 Crystal structure of a galactofuranose binding protein (see paper)
26% identity, 72% coverage of query (70.1 bits)
YphF / b2548 putative ABC transporter periplasmic binding protein YphF from Escherichia coli K-12 substr. MG1655 (see 4 papers)
25% identity, 74% coverage of query (63.9 bits)
PGA1_262p00430 glucose transporter, periplasmic substrate-binding component from Phaeobacter inhibens BS107
25% identity, 77% coverage of query (61.2 bits)
HSERO_RS05260 ABC transporter for L-fucose, substrate-binding component from Herbaspirillum seropedicae SmR1
24% identity, 79% coverage of query (60.5 bits)
CelR / VIMSS3677680 CelR regulator of Cellobiose utilization, effector Cellobiose (repressor) from Thermotoga lettingae TMO
26% identity, 74% coverage of query (59.7 bits)
XylT / b3566 xylose ABC transporter periplasmic binding protein (EC 7.5.2.13; EC 7.5.2.10) from Escherichia coli K-12 substr. MG1655 (see 8 papers)
xylF / P37387 xylose ABC transporter periplasmic binding protein (EC 7.5.2.13) from Escherichia coli (strain K12) (see 6 papers)
TC 3.A.1.2.4 / P37387 XylF aka XYLT aka B3566, component of Xylose porter from Escherichia coli (see 5 papers)
xylF / GB|AAC76590.1 D-xylose ABC transporter, periplasmic D-xylose-binding protein from Escherichia coli K12 (see 7 papers)
26% identity, 74% coverage of query (58.9 bits)
4wt7A / B9K0E0 Crystal structure of an abc transporter solute binding protein (ipr025997) from agrobacterium vitis (avi_5165, target efi-511223) with bound allitol
27% identity, 79% coverage of query (57.4 bits)
3ma0A / P37387 Closed liganded crystal structure of xylose binding protein from escherichia coli (see paper)
25% identity, 73% coverage of query (57.4 bits)
4ywhA / A6VLM7 Crystal structure of an abc transporter solute binding protein (ipr025997) from actinobacillus succinogenes 130z (asuc_0499, target efi-511068) with bound d-xylose
27% identity, 73% coverage of query (56.2 bits)
MglB / b2150 D-galactose/methyl-galactoside ABC transporter periplasmic binding protein from Escherichia coli K-12 substr. MG1655 (see 43 papers)
MglB / P0AEE5 D-galactose/methyl-galactoside ABC transporter periplasmic binding protein from Escherichia coli (strain K12) (see 42 papers)
MGLB_ECOLI / P0AEE5 D-galactose/methyl-galactoside binding periplasmic protein MglB; D-galactose-binding periplasmic protein; GBP; D-galactose/D-glucose-binding protein; GGBP from Escherichia coli (strain K12) (see 3 papers)
TC 3.A.1.2.3 / P0AEE5 D-galactose-binding periplasmic protein DGAL aka MglB aka B2150, component of Galactose/glucose (methyl galactoside) porter from Escherichia coli (see 10 papers)
27% identity, 83% coverage of query (51.6 bits)
P23905 D-galactose/methyl-galactoside binding periplasmic protein MglB; D-galactose-binding periplasmic protein; GBP; D-galactose/D-glucose-binding protein; GGBP from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
25% identity, 83% coverage of query (48.1 bits)
2qw1A Glucose/galactose binding protein bound to 3-o-methyl d-glucose
25% identity, 73% coverage of query (47.0 bits)
2gbpA / P0AEE5 Sugar and signal-transducer binding sites of the escherichia coli galactose chemoreceptor protein (see paper)
25% identity, 73% coverage of query (47.0 bits)
8fxtA Escherichia coli periplasmic glucose-binding protein glucose complex: acrylodan conjugate attached at w183c
25% identity, 73% coverage of query (45.8 bits)
1gcaA The 1.7 angstroms refined x-ray structure of the periplasmic glucose(slash)galactose receptor from salmonella typhimurium
24% identity, 73% coverage of query (43.9 bits)
3ga5A X-ray structure of glucose/galactose receptor from salmonella typhimurium in complex with (2r)-glyceryl-beta-d-galactopyranoside
24% identity, 73% coverage of query (43.9 bits)
4rxtA / B9JKX8 Crystal structure of carbohydrate transporter solute binding protein arad_9553 from agrobacterium radiobacter, target efi-511541, in complex with d-arabinose
25% identity, 85% coverage of query (43.5 bits)
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Lawrence Berkeley National Laboratory