Sites on a Tree

 

Searching for up to 100 curated homologs for GFF3581 FitnessBrowser__Phaeo:GFF3581 (455 a.a.)

Found high-coverage hits (≥70%) to 22 curated proteins.

Removed hits that are identical to the query, leaving 21

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

4f0lB / Q2YIL4 Crystal structure of amidohydrolase from brucella melitensis
    49% identity, 99% coverage of query (417 bits)

hutF / Q4KJP1 formiminoglutamate deiminase subunit (EC 3.5.3.13) from Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5) (see paper)
    47% identity, 100% coverage of query (380 bits)

PfGW456L13_330 Formiminoglutamic iminohydrolase (EC 3.5.3.13) from Pseudomonas fluorescens GW456-L13
    46% identity, 99% coverage of query (376 bits)

Pf1N1B4_1591 Formiminoglutamic iminohydrolase (EC 3.5.3.13) from Pseudomonas fluorescens FW300-N1B4
    46% identity, 99% coverage of query (375 bits)

HUTF_PSEAE / Q9HU77 Formimidoylglutamate deiminase; Formiminoglutamate deiminase; N-formimino-L-glutamate deiminase; N-formimino-L-glutamate iminohydrolase; EC 3.5.3.13 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see 3 papers)
Q9HU77 formimidoylglutamate deiminase (EC 3.5.3.13); formimidoylglutamase (EC 3.5.3.8) from Pseudomonas aeruginosa (see paper)
    48% identity, 99% coverage of query (375 bits)

Pf6N2E2_3808 Formiminoglutamic iminohydrolase (EC 3.5.3.13) from Pseudomonas fluorescens FW300-N2E2
    46% identity, 99% coverage of query (375 bits)

Ac3H11_2549 Formiminoglutamic iminohydrolase (EC 3.5.3.13) from Acidovorax sp. GW101-3H11
    48% identity, 95% coverage of query (374 bits)

PS417_01705 Formiminoglutamic iminohydrolase (EC 3.5.3.13) from Pseudomonas simiae WCS417
    46% identity, 100% coverage of query (373 bits)

4rdvB / Q9HU77 The structure of n-formimino-l-glutamate iminohydrolase from pseudomonas aeruginosa complexed with n-formimino-l-aspartate
    48% identity, 99% coverage of query (372 bits)

3mduA The structure of n-formimino-l-glutamate iminohydrolase from pseudomonas aeruginosa complexed with n-guanidino-l-glutamate
    49% identity, 96% coverage of query (372 bits)

AO356_09645 Formiminoglutamic iminohydrolase (EC 3.5.3.13) from Pseudomonas fluorescens FW300-N2C3
    46% identity, 99% coverage of query (371 bits)

AO353_12235 Formiminoglutamic iminohydrolase (EC 3.5.3.13) from Pseudomonas fluorescens FW300-N2E3
    45% identity, 99% coverage of query (369 bits)

SMc00673 Formiminoglutamic iminohydrolase (EC 3.5.3.13) from Sinorhizobium meliloti 1021
    48% identity, 99% coverage of query (366 bits)

Build an alignment

Build an alignment for GFF3581 and 13 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

PA0142 / Q9I6Z0 8-oxoguanine deaminase monomer (EC 3.5.4.32) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
OXODE_PSEAE / Q9I6Z0 8-oxoguanine deaminase; EC 3.5.4.32 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
Q9I6Z0 8-oxoguanine deaminase (EC 3.5.4.32) from Pseudomonas aeruginosa (see paper)
    28% identity, 95% coverage of query (73.6 bits)

atzB / P95442 hydroxyatrazine ethylaminohydrolase monomer (EC 3.5.4.43) from Pseudomonas sp. (strain ADP) (see 2 papers)
ATZB_PSESD / P95442 Hydroxydechloroatrazine ethylaminohydrolase; Hydroxyatrazine hydrolase; EC 3.5.4.43 from Pseudomonas sp. (strain ADP) (see paper)
    26% identity, 76% coverage of query (64.3 bits)

A1RCX5 hydroxydechloroatrazine ethylaminohydrolase (EC 3.5.4.43) from Paenarthrobacter aurescens (see paper)
    26% identity, 76% coverage of query (64.3 bits)

3hpaA Crystal structure of an amidohydrolase gi:44264246 from an evironmental sample of sargasso sea (see paper)
    25% identity, 96% coverage of query (63.5 bits)

4f0rA / Q7NZ90 Crystal structure of an adenosine deaminase homolog from chromobacterium violaceum (target nysgrc-019589) bound zn and 5'- methylthioadenosine (unproductive complex)
    22% identity, 87% coverage of query (62.0 bits)

4f0sA Crystal structure of an adenosine deaminase homolog from chromobacterium violaceum (target nysgrc-019589) with bound inosine.
    22% identity, 87% coverage of query (61.6 bits)

3lnpA / D3KFX9 Crystal structure of amidohydrolase family protein olei01672_1_465 from oleispira antarctica (see paper)
    20% identity, 96% coverage of query (59.7 bits)

8is4A / A0A4Q9D6T1 Structure of an isocytosine specific deaminase vcz in complexed with 5-fu (see paper)
    24% identity, 80% coverage of query (59.3 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory