Sites on a Tree

 

Searching for up to 100 curated homologs for GFF3596 FitnessBrowser__WCS417:GFF3596 (362 a.a.)

Found high-coverage hits (≥70%) to 55 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

ASPQ_PSEFA / O68897 Glutaminase-asparaginase; L-ASNase/L-GLNase; L-asparagine/L-glutamine amidohydrolase; EC 3.5.1.38 from Pseudomonas fluorescens biotype A (see paper)
    97% identity, 100% coverage of query (677 bits)

6wywA Crystal structure of pseudomonas 7a glutaminase-asparaginase in complex with l-asp at ph 4.5
    84% identity, 91% coverage of query (565 bits)

6wyyA Crystal structure of pseudomonas 7a glutaminase-asparaginase in complex with l-glu at ph 6.5
    83% identity, 91% coverage of query (561 bits)

1djoA / P10182 Crystal structure of pseudomonas 7a glutaminase-asparaginase with the inhibitor donv covalently bound in the active site (see paper)
    87% identity, 91% coverage of query (558 bits)

4pgaA Glutaminase-asparaginase from pseudomonas 7a
    87% identity, 91% coverage of query (558 bits)

1djpA Crystal structure of pseudomonas 7a glutaminase-asparaginase with the inhibitor don covalently bound in the active site
    87% identity, 91% coverage of query (558 bits)

6wyzA Crystal structure of pseudomonas 7a glutaminase-asparaginase (mutant k173m) in complex with d-glu at ph 5.5
    82% identity, 91% coverage of query (553 bits)

ASPQ_PSES7 / P10182 Glutaminase-asparaginase; L-ASNase/L-GLNase; L-asparagine/L-glutamine amidohydrolase; PGA; EC 3.5.1.38 from Pseudomonas sp. (strain ATCC 29598 / 7A) (see paper)
    84% identity, 93% coverage of query (547 bits)

ansB / PDB|1AGX_A glutaminase-asparaginase; EC 3.5.1.38 from Acinetobacter glutaminasificans (see 3 papers)
    62% identity, 91% coverage of query (414 bits)

ASPG2_BACSU / O34482 L-asparaginase 2; L-ASNase 2; L-asparagine amidohydrolase 2; EC 3.5.1.1 from Bacillus subtilis (strain 168) (see paper)
    49% identity, 94% coverage of query (303 bits)

C0KWF5 asparaginase (EC 3.5.1.1) from Escherichia coli (see paper)
    49% identity, 91% coverage of query (294 bits)

5k3oA / P50286 Wolinella succinogenes l-asparaginase p121 and l-aspartic acid (see paper)
    47% identity, 90% coverage of query (294 bits)

5k45A Wolinella succinogenes l-asparaginase p121 + l-glutamic acid
    47% identity, 90% coverage of query (294 bits)

AnsB / b2957 L-asparaginase 2 (EC 3.5.1.38; EC 3.5.1.1) from Escherichia coli K-12 substr. MG1655 (see 4 papers)
ansB / P00805 L-asparaginase 2 (EC 3.5.1.38) from Escherichia coli (strain K12) (see 73 papers)
ASPG2_ECOLI / P00805 L-asparaginase 2; L-asparaginase II; L-ASNase II; L-asparagine amidohydrolase II; Colaspase; EC 3.5.1.1 from Escherichia coli (strain K12) (see 5 papers)
    49% identity, 91% coverage of query (291 bits)

P50286 asparaginase (EC 3.5.1.1) from Wolinella succinogenes (see paper)
    47% identity, 90% coverage of query (290 bits)

1ho3A Crystal structure analysis of e. Coli l-asparaginase ii (y25f mutant)
    49% identity, 91% coverage of query (290 bits)

7r5qA Escherichia coli type ii asparaginase n24s mutant in complex with glu
    46% identity, 91% coverage of query (286 bits)

1jazA Crystal structure of monoclinic form of d90e mutant of escherichia coli asparaginase ii
    46% identity, 91% coverage of query (286 bits)

ansB1 / Q6Q4F4 L-asparaginase subunit (EC 3.5.1.38) from Pectobacterium atrosepticum (see 10 papers)
Q6Q4F4 asparaginase (EC 3.5.1.1) from Pectobacterium atrosepticum (see paper)
    45% identity, 97% coverage of query (285 bits)

2gvnA / I1SBD9 L-asparaginase from erwinia carotovora in complex with aspartic acid (see paper)
    47% identity, 91% coverage of query (283 bits)

ASPG_DICCH / P06608 L-asparaginase; L-ASNase; L-asparagine amidohydrolase; EC 3.5.1.1 from Dickeya chrysanthemi (Pectobacterium chrysanthemi) (Erwinia chrysanthemi) (see 3 papers)
    45% identity, 91% coverage of query (281 bits)

6pa3A / P00805 E. Coli l-asparaginase ii double mutant (t89v,k162t) in complex with l-asn at ph 7.0 (see paper)
    48% identity, 91% coverage of query (280 bits)

1hg0A X-ray structure of the complex between erwinia chrysanthemi l- asparaginase and succinic acid
    44% identity, 91% coverage of query (279 bits)

2wltA / Q9ZLB9 The crystal structure of helicobacter pylori l-asparaginase at 1.4 a resolution (see paper)
    44% identity, 91% coverage of query (278 bits)

1jsrA Crystal structure of erwinia chrysanthemi l-asparaginase complexed with 6-hydroxy-l-norleucine
    44% identity, 91% coverage of query (277 bits)

1jslA Crystal structure of erwinia chrysanthemi l-asparaginase complexed with 6-hydroxy-d-norleucine
    44% identity, 91% coverage of query (277 bits)

7u6mC / P06608 Albumin binding domain fused to a mutant of the erwinia asparaginase (see paper)
    44% identity, 92% coverage of query (276 bits)

Q66CJ2 asparaginase (EC 3.5.1.1) from Yersinia pseudotuberculosis (see 2 papers)
    46% identity, 86% coverage of query (275 bits)

Q9ZLB9 asparaginase (EC 3.5.1.1) from Helicobacter pylori J99 (see paper)
    43% identity, 91% coverage of query (273 bits)

fraE / Q8ZLD3 N-(1-deoxy-D-fructos-1-yl)-L-asparaginase (EC 3.5.1.1) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see 2 papers)
    45% identity, 93% coverage of query (272 bits)

Q6Q4F3 asparaginase (EC 3.5.1.1) from Dickeya chrysanthemi (see 2 papers)
    45% identity, 91% coverage of query (272 bits)

2hlnA L-asparaginase from erwinia carotovora in complex with glutamic acid
    45% identity, 91% coverage of query (265 bits)

B6ZCD8 asparaginase (EC 3.5.1.1) from Helicobacter pylori (see paper)
I0ZIE0 asparaginase (EC 3.5.1.1) from Helicobacter pylori (see paper)
    44% identity, 91% coverage of query (264 bits)

BPHYT_RS08815 L-asparaginase (EC 3.5.1.1) from Burkholderia phytofirmans PsJN
    46% identity, 91% coverage of query (263 bits)

A0A2X5A091 asparaginase (EC 3.5.1.1); glutaminase (EC 3.5.1.2) from Helicobacter pylori (see paper)
    43% identity, 91% coverage of query (261 bits)

1hfwA X-ray structure of the complex between erwinia chrysanthemi l-asparaginase and l-glutamate
    43% identity, 91% coverage of query (257 bits)

1hg1A X-ray structure of the complex between erwinia chrysanthemi l-asparaginase and d-aspartate
    43% identity, 91% coverage of query (255 bits)

ASP22_YEAST / P0CX77 L-asparaginase 2-2; L-asparaginase II; L-asparagine amidohydrolase II; ASP II; EC 3.5.1.1 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 3 papers)
ASP23_YEAST / P0CX78 L-asparaginase 2-3; L-asparaginase II; L-asparagine amidohydrolase II; ASP II; EC 3.5.1.1 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 3 papers)
ASP24_YEAST / P0CX79 L-asparaginase 2-4; L-asparaginase II; L-asparagine amidohydrolase II; ASP II; EC 3.5.1.1 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 3 papers)
ASP21_YEAST / P0CZ17 L-asparaginase 2-1; L-asparaginase II; L-asparagine amidohydrolase II; ASP II; EC 3.5.1.1 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 3 papers)
P0CZ17 asparaginase (EC 3.5.1.1) from Saccharomyces cerevisiae (see paper)
    36% identity, 91% coverage of query (184 bits)

P38986 asparaginase (EC 3.5.1.1) from Saccharomyces cerevisiae (see paper)
    34% identity, 90% coverage of query (171 bits)

P38986 L-asparaginase 1; L-asparaginase I; L-asparagine amidohydrolase I; ASP I; EC 3.5.1.1 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
    34% identity, 90% coverage of query (171 bits)

Build an alignment

Build an alignment for GFF3596 and 40 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

8h4aB / A0A6I7U6Y2 Blasnase-t13a/m57p
    29% identity, 90% coverage of query (125 bits)

7cbuA Blasnase-t13a with l-asp
    29% identity, 87% coverage of query (124 bits)

7c8xA Blasnase-t13a with l-asn
    30% identity, 87% coverage of query (124 bits)

7c8qA Blasnase-t13a with d-asn
    30% identity, 87% coverage of query (124 bits)

J9H7D1 asparaginase (EC 3.5.1.1) from Staphylococcus sp. (see paper)
    28% identity, 90% coverage of query (123 bits)

1zq1A / Q9V0T9 Structure of gatde tRNA-dependent amidotransferase from pyrococcus abyssi (see paper)
    28% identity, 92% coverage of query (106 bits)

gatD / O26802 glutamyl-tRNA(Gln) amidotransferase subunit D (EC 6.3.5.7) from Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) (see paper)
    27% identity, 93% coverage of query (90.9 bits)

ASPG_MYCTU / P9WPX5 L-asparaginase; L-ASNase; L-asparagine amidohydrolase; EC 3.5.1.1 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see 2 papers)
    31% identity, 77% coverage of query (74.3 bits)

4q0mA / Q8TZE8 Crystal structure of pyrococcus furiosus l-asparaginase (see paper)
    26% identity, 73% coverage of query (70.9 bits)

ASPG_PYRFU / Q8TZE8 L-asparaginase; EC 3.5.1.1 from Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (see 5 papers)
Q8TZE8 asparaginase (EC 3.5.1.1) from Pyrococcus furiosus (see 2 papers)
    26% identity, 72% coverage of query (70.9 bits)

CA265_RS25090 L-asparaginase (EC 3.5.1.1) from Pedobacter sp. GW460-11-11-14-LB5
    26% identity, 79% coverage of query (61.6 bits)

PfGW456L13_740 L-asparaginase (EC 3.5.1.1) from Pseudomonas fluorescens GW456-L13
    23% identity, 77% coverage of query (51.2 bits)

Pf6N2E2_4087 L-asparaginase (EC 3.5.1.1) from Pseudomonas fluorescens FW300-N2E2
    23% identity, 77% coverage of query (49.3 bits)

AO356_11100 L-asparaginase (EC 3.5.1.1) from Pseudomonas fluorescens FW300-N2C3
    23% identity, 77% coverage of query (48.9 bits)

Pf1N1B4_2023 L-asparaginase (EC 3.5.1.1) from Pseudomonas fluorescens FW300-N1B4
    23% identity, 77% coverage of query (48.9 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory