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Searching for up to 100 curated homologs for GFF3711 FitnessBrowser__Marino:GFF3711 (348 a.a.)

Found high-coverage hits (≥70%) to 15 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

AMIE_PSEAE / P11436 Aliphatic amidase; Acylamide amidohydrolase; EC 3.5.1.4 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
P11436 amidase (EC 3.5.1.4) from Pseudomonas aeruginosa (see paper)
    85% identity, 99% coverage of query (638 bits)

AMIE_RHOER / Q01360 Aliphatic amidase; Acylamide amidohydrolase; Wide spectrum amidase; EC 3.5.1.4 from Rhodococcus erythropolis (Arthrobacter picolinophilus)
    85% identity, 98% coverage of query (629 bits)

AMIE_GEOSE / Q9RQ17 Aliphatic amidase; Acylamide amidohydrolase; Wide spectrum amidase; EC 3.5.1.4 from Geobacillus stearothermophilus (Bacillus stearothermophilus) (see paper)
    83% identity, 99% coverage of query (628 bits)

AMIE_BACSP / Q9L543 Aliphatic amidase; Acylamide amidohydrolase; EC 3.5.1.4 from Bacillus sp. (see paper)
    82% identity, 100% coverage of query (626 bits)

4gylA / Q9L543 The e142l mutant of the amidase from geobacillus pallidus showing the result of michael addition of acrylamide at the active site cysteine (see paper)
    83% identity, 97% coverage of query (617 bits)

AMIE_HELPY / O25067 Aliphatic amidase; Acylamide amidohydrolase; EC 3.5.1.4 from Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori) (see 3 papers)
    78% identity, 97% coverage of query (572 bits)

AMIF_HELPY / O25836 Formamidase; Formamide amidohydrolase; EC 3.5.1.49 from Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori) (see 2 papers)
    38% identity, 82% coverage of query (206 bits)

P59701 formamidase (EC 3.5.1.49) from Bacillus cereus (see paper)
    37% identity, 84% coverage of query (201 bits)

2e2lA / O25836 Helicobacter pylori formamidase amif contains a fine-tuned cysteine- glutamate-lysine catalytic triad (see paper)
    37% identity, 82% coverage of query (192 bits)

Build an alignment

Build an alignment for GFF3711 and 9 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

3klcA / Q9UYV8 Crystal structure of hyperthermophilic nitrilase (see paper)
    26% identity, 74% coverage of query (77.4 bits)

3klcB Crystal structure of hyperthermophilic nitrilase
    26% identity, 74% coverage of query (77.4 bits)

NITR_PYRAB / Q9UYV8 Nitrilase; PaNit; EC 3.5.5.1 from Pyrococcus abyssi (strain GE5 / Orsay) (see 2 papers)
    26% identity, 74% coverage of query (75.1 bits)

NIT1_MOUSE / Q8VDK1 Deaminated glutathione amidase; dGSH amidase; Nitrilase homolog 1; EC 3.5.1.128 from Mus musculus (Mouse) (see 7 papers)
Q8VDK1 deaminated glutathione amidase (EC 3.5.1.128) from Mus musculus (see paper)
    26% identity, 72% coverage of query (62.0 bits)

NIT1_HUMAN / Q86X76 Deaminated glutathione amidase; dGSH amidase; Nitrilase homolog 1; EC 3.5.1.128 from Homo sapiens (Human) (see paper)
    24% identity, 72% coverage of query (60.8 bits)

ORF77 / Q93NG1 2-ketoglutaramate amidase monomer (EC 3.5.1.3) from Paenarthrobacter nicotinovorans (see 2 papers)
NIT_PAENI / Q93NG1 2-oxoglutaramate amidase; Omega-amidase; EC 3.5.1.111 from Paenarthrobacter nicotinovorans (Arthrobacter nicotinovorans) (see paper)
Q93NG1 2-oxoglutaramate amidase (EC 3.5.1.111) from Paenarthrobacter nicotinovorans (see paper)
    23% identity, 77% coverage of query (53.1 bits)

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory