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Searching for up to 100 curated homologs for GFF3817 FitnessBrowser__Phaeo:GFF3817 (433 a.a.)

Found high-coverage hits (≥70%) to 11 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

amaA / Q88CC4 pipecolate oxidase (EC 1.5.3.7) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) (see 3 papers)
    40% identity, 97% coverage of query (298 bits)

AO356_21495 gamma-glutamylputrescine oxidase (EC 1.4.3.-) from Pseudomonas fluorescens FW300-N2C3
    30% identity, 90% coverage of query (136 bits)

YcjA / b1301 γ-glutamylputrescine oxidase from Escherichia coli K-12 substr. MG1655 (see 6 papers)
puuB / P37906 γ-glutamylputrescine oxidase from Escherichia coli (strain K12) (see 4 papers)
PUUB_ECOLI / P37906 Gamma-glutamylputrescine oxidoreductase; Gamma-Glu-Put oxidase; Gamma-glutamylputrescine oxidase; EC 1.4.3.- from Escherichia coli (strain K12) (see paper)
puuB / BAD88709.1 gamma-glutamylputrescine oxidase from Escherichia coli K-12 (see paper)
    30% identity, 93% coverage of query (135 bits)

Build an alignment

Build an alignment for GFF3817 and 3 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

Pf6N2E2_80 gamma-glutamylputrescine oxidase (EC 1.4.3.-) from Pseudomonas fluorescens FW300-N2E2
    29% identity, 87% coverage of query (123 bits)

Q6RH53 taurine dehydrogenase (EC 1.4.99.2) from Paracoccus pantotrophus (see paper)
    30% identity, 90% coverage of query (118 bits)

Q1XEP4 taurine dehydrogenase (EC 1.4.99.2) from Paracoccus versutus (see paper)
    30% identity, 90% coverage of query (117 bits)

Q6RH61 taurine dehydrogenase (EC 1.4.99.2) from Paracoccus denitrificans (see paper)
    31% identity, 90% coverage of query (110 bits)

nmpC / A0A222FYP8 4-methylaminobutanoate oxidase (EC 1.5.3.21) from Alicycliphilus sp. (see paper)
    30% identity, 87% coverage of query (102 bits)

Q6RH44 taurine dehydrogenase (EC 1.4.99.2) from Paracoccus pantotrophus (see paper)
    30% identity, 90% coverage of query (99.0 bits)

O59445 proline dehydrogenase (EC 1.5.5.2) from Pyrococcus horikoshii (see paper)
    22% identity, 86% coverage of query (77.4 bits)

Q8U022 proline dehydrogenase (EC 1.5.5.2) from Pyrococcus furiosus (see paper)
    23% identity, 86% coverage of query (73.6 bits)

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory