Sites on a Tree


Searching for up to 100 curated homologs for GFF4149 HP15_4089 iron-sulfur cluster binding protein (483 a.a.)

Found high-coverage hits (≥70%) to 6 curated proteins.

Removed hits that are identical to the query, leaving 5

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

RR42_RS21285 L-lactate dehydrogenase, LutB subunit from Cupriavidus basilensis FW507-4G11
    63% identity, 95% coverage of query (604 bits)

LUTB_BACSU / O07021 Lactate utilization protein B from Bacillus subtilis (strain 168) (see paper)
    40% identity, 96% coverage of query (358 bits)

LUTB_BACCR / Q81GA4 Lactate utilization protein B from Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711) (see paper)
    41% identity, 95% coverage of query (349 bits)

YkgF / b0307 putative amino acid dehydrogenase with NAD(P)-binding domain and ferridoxin-like domain from Escherichia coli K-12 substr. MG1655 (see 4 papers)
    42% identity, 79% coverage of query (341 bits)

BPHYT_RS26970 L-lactate dehydrogenase, LldF subunit from Burkholderia phytofirmans PsJN
    42% identity, 83% coverage of query (303 bits)

Build an alignment

Build an alignment for GFF4149 and 5 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory