Sites on a Tree

 

Searching for up to 100 curated homologs for GFF4150 FitnessBrowser__Marino:GFF4150 (223 a.a.)

Found high-coverage hits (≥70%) to 4 curated proteins.

Removed hits that are identical to the query, leaving 3

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

RR42_RS21290 L-lactate dehydrogenase, LutC subunit from Cupriavidus basilensis FW507-4G11
    43% identity, 99% coverage of query (166 bits)

Q5F884 L-lactate dehydrogenase (subunit 2/3) (EC 1.1.1.27) from Neisseria gonorrhoeae (see paper)
    38% identity, 99% coverage of query (156 bits)

Build an alignment

Build an alignment for GFF4150 and 2 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

HP15_4089 L-lactate dehydrogenase, LutB subunit from Marinobacter adhaerens HP15
    24% identity, 74% coverage of query (46.6 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory