Searching for up to 100 curated homologs for GFF4165 FitnessBrowser__WCS417:GFF4165 (326 a.a.)

Found high-coverage hits (≥70%) to 12 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

Pf1N1B4_411 ABC transporter for D-galactose/L-arabinose, substrate-binding component from Pseudomonas fluorescens FW300-N1B4
    81% identity, 96% coverage of query (520 bits)

Pf6N2E2_5968 ABC transporter for D-galactose/L-arabinose, substrate-binding component from Pseudomonas fluorescens FW300-N2E2
    78% identity, 96% coverage of query (512 bits)

AraF / b1901 arabinose ABC transporter periplasmic binding protein (EC 7.5.2.13; EC 7.5.2.12) from Escherichia coli K-12 substr. MG1655 (see 4 papers)
AraF / P02924 arabinose ABC transporter periplasmic binding protein (EC 7.5.2.13) from Escherichia coli (strain K12) (see 2 papers)
ARAF_ECOLI / P02924 L-arabinose-binding periplasmic protein; ABP from Escherichia coli (strain K12) (see paper)
TC 3.A.1.2.2 / P02924 AraF aka B1901, component of Arabinose porter from Escherichia coli (see 10 papers)
    59% identity, 99% coverage of query (380 bits)

1abeA / P02924 Novel stereospecificity of the l-arabinose-binding protein (see paper)
    60% identity, 92% coverage of query (364 bits)

5abpA Substrate specificity and affinity of a protein modulated by bound water molecules
    60% identity, 92% coverage of query (364 bits)

1abfA Substrate specificity and affinity of a protein modulated by bound water molecules
    60% identity, 92% coverage of query (364 bits)

BPHYT_RS16935 D-galactose ABC transporter, substrate-binding component from Burkholderia phytofirmans PsJN
    48% identity, 98% coverage of query (296 bits)

4kzkA / Q2T607 The structure of the periplasmic l-arabinose binding protein from burkholderia thailandensis
    46% identity, 92% coverage of query (259 bits)

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Build an alignment for GFF4165 and 8 homologs with ≥ 30% identity

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Additional hits (identity < 30%)

PS417_18405 D-ribose ABC transporter, substrate-binding component RbsB from Pseudomonas simiae WCS417
    25% identity, 74% coverage of query (46.6 bits)

TC 3.A.1.2.13 / A6VKT0 RbsB, component of The probable autoinducer-2 (AI-2;, a furanosyl borate diester: 3aS,6S,6aR)-2,2,6,6a-tetrahydroxy-3a-methyltetrahydrofuro[3,2-d][1,3,2]dioxaborolan-2-uide) uptake porter (Shao et al., 2007) (50-70% identical to RbsABC of E. coli; TC# 3.A.1.2.1) from Actinobacillus succinogenes (strain ATCC 55618 / 130Z)
    26% identity, 77% coverage of query (46.2 bits)

YtfQ / b4227 galactofuranose ABC transporter periplasmic binding protein (EC 7.5.2.9) from Escherichia coli K-12 substr. MG1655 (see 3 papers)
YtfQ / P39325 galactofuranose ABC transporter periplasmic binding protein (EC 7.5.2.9) from Escherichia coli (strain K12) (see 3 papers)
YTFQ_ECOLI / P39325 Galactofuranose-binding protein YtfQ from Escherichia coli (strain K12) (see paper)
P39325 ABC-type D-galactofuranose transporter (EC 7.5.2.9) from Escherichia coli (see paper)
    26% identity, 98% coverage of query (46.2 bits)

2vk2A / P39325 Crystal structure of a galactofuranose binding protein (see paper)
    25% identity, 91% coverage of query (43.9 bits)

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