Searching for up to 100 curated homologs for GFF4170 (82 a.a.)
Found high-coverage hits (≥70%) to 41 curated proteins.
You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.
RpsP / b2609 30S ribosomal subunit protein S16 from Escherichia coli K-12 substr. MG1655 (see 15 papers)
rpsP / P0A7T3 30S ribosomal subunit protein S16 from Escherichia coli (strain K12) (see 12 papers)
RS16_ECOLI / P0A7T3 Small ribosomal subunit protein bS16; 30S ribosomal protein S16 from Escherichia coli (strain K12) (see 11 papers)
4a2iP / P0A7T3 Cryo-electron microscopy structure of the 30s subunit in complex with the yjeq biogenesis factor (see paper)
rpsP / RF|NP_417100 30S ribosomal protein S16 from Escherichia coli K12 (see 13 papers)
98% identity, 100% coverage of query (164 bits)
6ztlAP coli 70S-RNAP expressome complex in collided state bound to NusG
98% identity, 100% coverage of query (164 bits)
7m4up / A0A1V3DIZ9 A. Baumannii ribosome-eravacycline complex: 30s (see paper)
72% identity, 99% coverage of query (122 bits)
7unrp / Q9HXP9 7unrp
60% identity, 99% coverage of query (107 bits)
8rd8Pj / A0A0M4T275 8rd8Pj (see paper)
60% identity, 99% coverage of query (107 bits)
RS16_RHOPA / P62236 Small ribosomal subunit protein bS16; 30S ribosomal protein S16; RRP-S16 from Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) (see paper)
59% identity, 90% coverage of query (92.8 bits)
8fmwP / O51638 8fmwP (see paper)
46% identity, 90% coverage of query (76.3 bits)
RS16_BACSU / P21474 Small ribosomal subunit protein bS16; 30S ribosomal protein S16; BS17 from Bacillus subtilis (strain 168) (see paper)
50% identity, 90% coverage of query (72.8 bits)
3j9wAP / P21474 3j9wAP (see paper)
50% identity, 90% coverage of query (72.8 bits)
5myjAP / A2RJS1 of 70S ribosome from Lactococcus lactis (see paper)
46% identity, 90% coverage of query (72.4 bits)
RT16_BOVIN / P82915 Small ribosomal subunit protein bS16m; 28S ribosomal protein S16, mitochondrial; MRP-S16; S16mt from Bos taurus (Bovine) (see 2 papers)
44% identity, 90% coverage of query (72.4 bits)
7pntM / Q9CPX7 7pntM (see paper)
43% identity, 90% coverage of query (71.6 bits)
RT16_HUMAN / Q9Y3D3 Small ribosomal subunit protein bS16m; 28S ribosomal protein S16, mitochondrial; MRP-S16; S16mt from Homo sapiens (Human) (see 2 papers)
43% identity, 90% coverage of query (71.2 bits)
6o8wp / A0A1B4XP69 6o8wp (see paper)
47% identity, 90% coverage of query (71.2 bits)
RT16_ARATH / Q9LTS6 Small ribosomal subunit protein bS16m/bS16c; 30S ribosomal protein S16-2, mitochondrial/chloroplastic from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
44% identity, 91% coverage of query (70.9 bits)
8oisAM 28S ribosomal protein S35, mitochondrial
43% identity, 90% coverage of query (70.9 bits)
7p2eM 28S ribosomal protein S9, mitochondrial
43% identity, 90% coverage of query (70.9 bits)
6xywBo / Q9LTS6 6xywBo (see paper)
44% identity, 91% coverage of query (70.5 bits)
RS16A_ARATH / O65686 Small ribosomal subunit protein bS16cy; 30S ribosomal protein S16-1, chloroplastic; Small subunit ribosomal protein 16 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
46% identity, 90% coverage of query (70.5 bits)
RS16_THET8 / Q5SJH3 Small ribosomal subunit protein bS16; 30S ribosomal protein S16 from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) (see paper)
1hnwP / Q5SJH3 Structure of the thermus thermophilus 30s ribosomal subunit in complex with tetracycline (see paper)
38% identity, 94% coverage of query (67.4 bits)
1i94P Crystal structures of the small ribosomal subunit with tetracycline, edeine and if3
38% identity, 94% coverage of query (67.4 bits)
7nhnq / Q8Y699 7nhnq (see paper)
45% identity, 90% coverage of query (64.7 bits)
7bgdp / Q2FZ45 Staphylococcus aureus 30s ribosomal subunit in presence of spermidine (body only)
39% identity, 90% coverage of query (62.8 bits)
8om2P / Q02608 8om2P (see paper)
39% identity, 94% coverage of query (61.6 bits)
RT16_YEAST / Q02608 Small ribosomal subunit protein bS16m; 37S ribosomal protein S16, mitochondrial from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 5 papers)
39% identity, 94% coverage of query (61.6 bits)
RS16_MYCGE / P47684 Small ribosomal subunit protein bS16; 30S ribosomal protein S16 from Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37) (Mycoplasmoides genitalium) (see paper)
40% identity, 94% coverage of query (59.3 bits)
RT16_NEUCR / P08580 Small ribosomal subunit protein bS16m; Ribosomal protein S16, mitochondrial; S24 from Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (see paper)
34% identity, 95% coverage of query (57.8 bits)
6yw5PP / P08580 structure of the small subunit of the mitoribosome from Neurospora crassa (see paper)
34% identity, 95% coverage of query (57.8 bits)
8crxP / Q6A7S4 8crxP (see paper)
42% identity, 89% coverage of query (57.8 bits)
5o5jP Structure of the 30s small ribosomal subunit from mycobacterium smegmatis
37% identity, 91% coverage of query (56.2 bits)
RR16_SPIOL / P28807 Small ribosomal subunit protein bS16c; 30S ribosomal protein S16, chloroplastic from Spinacia oleracea (Spinach) (see 2 papers)
37% identity, 93% coverage of query (54.3 bits)
6eriBP / P28807 6eriBP (see paper)
37% identity, 93% coverage of query (54.3 bits)
RR16_SOLLC / Q2MIB8 Small ribosomal subunit protein bS16c; 30S ribosomal protein S16, chloroplastic from Solanum lycopersicum (Tomato) (Lycopersicon esculentum) (see paper)
34% identity, 94% coverage of query (53.9 bits)
7oocO / P75131 Mycoplasma pneumoniae 30s subunit of ribosomes in chloramphenicol- treated cells (see paper)
36% identity, 94% coverage of query (53.5 bits)
RR16_LOTJA / P58125 Small ribosomal subunit protein bS16c; 30S ribosomal protein S16, chloroplastic from Lotus japonicus (Lotus corniculatus var. japonicus) (see paper)
36% identity, 94% coverage of query (52.0 bits)
8a22Bp 8a22Bp (see paper)
33% identity, 94% coverage of query (52.0 bits)
RR16_ORYSJ / P12151 Small ribosomal subunit protein bS16c; 30S ribosomal protein S16, chloroplastic from Oryza sativa subsp. japonica (Rice) (see paper)
37% identity, 94% coverage of query (51.6 bits)
RR16_ANTAG / Q85CF2 Small ribosomal subunit protein bS16c; 30S ribosomal protein S16, chloroplastic from Anthoceros angustus (Hornwort) (Anthoceros formosae) (see 2 papers)
32% identity, 94% coverage of query (50.4 bits)
7mscp / P9WH53 70SIC in complex with MtbEttA at Pre_R0 state (see paper)
36% identity, 91% coverage of query (49.7 bits)
RR16_ARATH / P56806 Small ribosomal subunit protein bS16cz; 30S ribosomal protein S16, chloroplastic from Arabidopsis thaliana (Mouse-ear cress) (see paper)
38% identity, 79% coverage of query (48.9 bits)
Build an alignment for GFF4170 and 40 homologs with ≥ 30% identity
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6z1pBp / I7M3F6 6z1pBp (see paper)
29% identity, 90% coverage of query (43.9 bits)
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Lawrence Berkeley National Laboratory