Searching for up to 100 curated homologs for GFF4196 FitnessBrowser__psRCH2:GFF4196 (208 a.a.)
Found high-coverage hits (≥70%) to 5 curated proteins.
Removed hits that are identical to the query, leaving 4
You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.
DCTQ_PSEAE / Q9HU17 C4-dicarboxylate TRAP transporter small permease protein DctQ from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
75% identity, 100% coverage of query (313 bits)
Build an alignment for GFF4196 and 1 homologs with ≥ 30% identity
Or download the sequences
Sama_2210 alpha-ketoglutarate TRAP transporter, small permease component from Shewanella amazonensis SB2B
28% identity, 97% coverage of query (82.4 bits)
Shew_1445 dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), small permease component from Shewanella loihica PV-4
26% identity, 98% coverage of query (80.9 bits)
DCTQ_RHOCA / O07837 C4-dicarboxylate TRAP transporter small permease protein DctQ from Rhodobacter capsulatus (Rhodopseudomonas capsulata) (see 2 papers)
TC 2.A.56.1.1 / O07837 DctQ, component of Tripartite dicarboxylate:H+ symporter (substrates include: fumarate, D- and L-malate, succinate, succinamide, orotate, iticonate and mesaconate) from Rhodobacter capsulatus (Rhodopseudomonas capsulata) (see 2 papers)
27% identity, 84% coverage of query (50.4 bits)
Or start over
Lawrence Berkeley National Laboratory