Searching for up to 100 curated homologs for GFF4297 FitnessBrowser__WCS417:GFF4297 (245 a.a.)
Found high-coverage hits (≥70%) to 17 curated proteins.
You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.
PP_1171 Uronate dehydrogenase (EC 1.1.1.203) from Pseudomonas putida KT2440
URODH_PSEPK / Q88NN6 Uronate dehydrogenase; D-galacturonate dehydrogenase; D-glucuronate dehydrogenase; Hexuronate dehydrogenase; EC 1.1.1.203 from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) (see paper)
Q88NN6 uronate dehydrogenase (EC 1.1.1.203) from Pseudomonas putida KT2440 (see paper)
38% identity, 94% coverage of query (145 bits)
Pf1N1B4_4511 D-galacturonate dehydrogenase (EC 1.1.1.203) from Pseudomonas fluorescens FW300-N1B4
36% identity, 93% coverage of query (134 bits)
udh / Q888H1 uronic acid dehydrogenase subunit (EC 1.1.1.203) from Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000) (see 2 papers)
URODH_PSESM / Q888H1 Uronate dehydrogenase; D-galacturonate dehydrogenase; D-glucuronate dehydrogenase; Hexuronate dehydrogenase; EC 1.1.1.203 from Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000) (see paper)
Q888H1 uronate dehydrogenase (EC 1.1.1.203) from Pseudomonas syringae pv. tomato (see 4 papers)
36% identity, 94% coverage of query (130 bits)
PS417_17360 D-galacturonate dehydrogenase (EC 1.1.1.203) from Pseudomonas simiae WCS417
36% identity, 94% coverage of query (127 bits)
azf / D4GS48 NAD-dependent glucose-6-phosphate dehydrogenase monomer (EC 1.1.1.388) from Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) (see paper)
G6PD_HALVD / D4GS48 NAD-dependent glucose-6-phosphate dehydrogenase; Glc6PDH; Archaeal zwischenferment; EC 1.1.1.388 from Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) (Halobacterium volcanii) (see paper)
D4GS48 glucose-6-phosphate dehydrogenase (NAD+) (EC 1.1.1.388) from Haloferax volcanii (see paper)
34% identity, 96% coverage of query (120 bits)
udh / Q7CRQ0 D-uronate dehydrogenase moomer (EC 1.1.1.203) from Agrobacterium fabrum (strain C58 / ATCC 33970) (see 6 papers)
URODH_AGRFC / Q7CRQ0 Uronate dehydrogenase; D-galacturonate dehydrogenase; D-glucuronate dehydrogenase; Hexuronate dehydrogenase; EC 1.1.1.203 from Agrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium tumefaciens (strain C58)) (see 4 papers)
Q7CRQ0 uronate dehydrogenase (EC 1.1.1.203) from Agrobacterium tumefaciens (see 4 papers)
35% identity, 95% coverage of query (118 bits)
3rfvA / Q7CRQ0 Crystal structure of uronate dehydrogenase from agrobacterium tumefaciens complexed with nadh and product (see paper)
35% identity, 95% coverage of query (118 bits)
xacB / D4GP33 L-arabinose 1-dehydrogenase (NADP+) monomer (EC 1.1.1.376) from Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) (see 3 papers)
ARADH_HALVD / D4GP33 L-arabinose 1-dehydrogenase (NAD(P)(+)); L-AraDH; EC 1.1.1.376 from Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) (Halobacterium volcanii) (see 2 papers)
D4GP33 L-arabinose 1-dehydrogenase [NAD(P)+] (EC 1.1.1.376); L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Haloferax volcanii (see paper)
35% identity, 96% coverage of query (115 bits)
3rfxA Crystal structure of uronate dehydrogenase from agrobacterium tumefaciens, y136a mutant complexed with NAD
35% identity, 95% coverage of query (114 bits)
HSERO_RS23040 D-galacturonate dehydrogenase (EC 1.1.1.203) from Herbaspirillum seropedicae SmR1
33% identity, 93% coverage of query (111 bits)
D6Y7Y8 uronate dehydrogenase (EC 1.1.1.203) from Thermobispora bispora (see paper)
35% identity, 95% coverage of query (107 bits)
4id9B / A9CL58 Crystal structure of a short-chain dehydrogenase/reductase superfamily protein from agrobacterium tumefaciens (target efi-506441) with bound NAD, monoclinic form 1
31% identity, 74% coverage of query (75.9 bits)
4id9A Crystal structure of a short-chain dehydrogenase/reductase superfamily protein from agrobacterium tumefaciens (target efi-506441) with bound NAD, monoclinic form 1
31% identity, 74% coverage of query (75.9 bits)
Build an alignment for GFF4297 and 13 homologs with ≥ 30% identity
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wbcB / Q56863 CDP-6-deoxy-α-D-gulose dehydrogenase from Yersinia enterocolitica (type O:8) (see 2 papers)
25% identity, 98% coverage of query (57.0 bits)
uxe / Q92WA3 UDP-xylose 4-epimerase subunit (EC 5.1.3.5) from Rhizobium meliloti (strain 1021) (see paper)
Q92WA3 UDP-arabinose 4-epimerase (EC 5.1.3.5) from Sinorhizobium meliloti (see paper)
27% identity, 70% coverage of query (54.7 bits)
jadT / Q939Q5 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) from Streptomyces venezuelae (strain ATCC 10712 / CBS 650.69 / DSM 40230 / JCM 4526 / NBRC 13096 / PD 04745) (see paper)
26% identity, 72% coverage of query (50.8 bits)
PSEB_CAMJE / Q0P8W4 UDP-N-acetylglucosamine 4,6-dehydratase (inverting); Pseudaminic acid biosynthesis protein B; UDP-GlcNAc-inverting 4,6-dehydratase; EC 4.2.1.115 from Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168) (see paper)
23% identity, 77% coverage of query (49.7 bits)
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Lawrence Berkeley National Laboratory