Searching for up to 100 curated homologs for GFF4324 FitnessBrowser__WCS417:GFF4324 (428 a.a.)
Found high-coverage hits (≥70%) to 19 curated proteins.
Removed hits that are identical to the query, leaving 18
You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.
TC 3.A.1.1.30 / Q88P38 GtsA (GLcE), component of Glucose porter, GtsABCD from Pseudomonas putida (strain KT2440) (see paper)
88% identity, 96% coverage of query (718 bits)
PfGW456L13_1894 ABC transporter for D-Galactose and D-Glucose, periplasmic substrate-binding component from Pseudomonas fluorescens GW456-L13
80% identity, 100% coverage of query (702 bits)
5dviA / H7BRJ8 High resolution crystal structure of glucose complexed periplasmic glucose binding protein (ppgbp) from p. Putida csv86 (see paper)
67% identity, 94% coverage of query (537 bits)
5dvjA Crystal structure of galactose complexed periplasmic glucose binding protein (ppgbp) from p. Putida csv86
67% identity, 94% coverage of query (537 bits)
Ac3H11_2062 glucose ABC transporter, substrate-binding component from Acidovorax sp. GW101-3H11
55% identity, 90% coverage of query (410 bits)
8hqqA / Q4FMK2 Crystal structure of the glucose-binding protein sar11_0769 from "candidatus pelagibacter ubique" htcc1062 bound to glucose
49% identity, 88% coverage of query (345 bits)
4r2bA / A6X5L9 Crystal structure of sugar transporter oant_3817 from ochrobactrum anthropi, target efi-510528, with bound glucose
44% identity, 94% coverage of query (330 bits)
SMc04259 ABC transporter for D-Cellobiose and D-Salicin, periplasmic substrate-binding protein from Sinorhizobium meliloti 1021
37% identity, 77% coverage of query (199 bits)
TC 3.A.1.1.24 / Q72KX2 Glucose-binding protein aka TT_C0328, component of The glucose/mannose porter TTC0326-8 plus MalK1 (ABC protein, shared with 3.A.1.1.25) from Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (see paper)
31% identity, 86% coverage of query (138 bits)
2b3bA / Q72KX2 Thermus thermophilus glucose/galactose binding protein with bound glucose (see paper)
30% identity, 82% coverage of query (127 bits)
2b3fA Thermus thermophilus glucose/galactose binding protein bound with galactose
30% identity, 82% coverage of query (127 bits)
2b3bC Thermus thermophilus glucose/galactose binding protein with bound glucose
30% identity, 82% coverage of query (127 bits)
Build an alignment for GFF4324 and 12 homologs with ≥ 30% identity
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XACG_HALVD / D4GP35 Xylose/arabinose-binding protein XacG from Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) (Halobacterium volcanii) (see paper)
25% identity, 86% coverage of query (88.2 bits)
7c0kB / Q5SLB4 Crystal structure of a dinucleotide-binding protein of abc transporter endogenously bound to uridylyl-3'-5'-phospho-guanosine (form ii) (see paper)
26% identity, 77% coverage of query (53.5 bits)
7c0oB Crystal structure of a dinucleotide-binding protein (y56f) of abc transporter endogenously bound to uridylyl-3'-5'-phospho-guanosine
25% identity, 95% coverage of query (53.5 bits)
TC 3.A.1.1.50 / Q5SLB4 Sugar ABC transporter, periplasmic sugar-binding protein, component of Probable glycerophosphocholine (GPC) uptake porter (Chandravanshi et al. 2016). The system may include a receptor and three membrane proteins (of 378 aas and 6 TMSs, 299 aas and 7 TMSs, and 113 aas and 3 TMSs (?). The ATPase has not been identified from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
26% identity, 77% coverage of query (53.1 bits)
7c0kA Crystal structure of a dinucleotide-binding protein of abc transporter endogenously bound to uridylyl-3'-5'-phospho-guanosine (form ii)
26% identity, 77% coverage of query (53.1 bits)
A0A3P4AR76 ABC-type glycerol 3-phosphate transporter (subunit 2/3) (EC 7.6.2.10) from Thermus thermophilus (see paper)
25% identity, 95% coverage of query (49.7 bits)
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Lawrence Berkeley National Laboratory