Sites on a Tree

 

Searching for up to 100 curated homologs for GFF51 FitnessBrowser__WCS417:GFF51 (250 a.a.)

Found high-coverage hits (≥70%) to 3 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

gadh3 / Q4KKM8 D-gluconate dehydrogenase 21.7 kD subunit (EC 1.1.99.3) from Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5) (see paper)
    80% identity, 100% coverage of query (401 bits)

A0A2H4PJM1 gluconate 2-dehydrogenase (subunit 3/3) (EC 1.1.1.215) from Pseudomonas plecoglossicida (see paper)
    63% identity, 96% coverage of query (299 bits)

gadh3 / O34213 gluconate 2-dehydrogenase subunit 3 (EC 1.1.99.3) from Pantoea cypripedii (see paper)
GADH3_PANCY / O34213 Gluconate 2-dehydrogenase subunit 3; GA 2-DH subunit 3; GADH subunit 3; EC 1.1.99.3 from Pantoea cypripedii (Pectobacterium cypripedii) (Erwinia cypripedii) (see paper)
    52% identity, 84% coverage of query (206 bits)

Build an alignment

Build an alignment for GFF51 and 3 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory