Sites on a Tree

 

Searching for up to 100 curated homologs for GFF5121 FitnessBrowser__WCS417:GFF5121 (646 a.a.)

Found high-coverage hits (≥70%) to 3 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

Pf6N2E2_4704 Dimethylglycine dehydrogenase (ferredoxin), FeS subunit DgcB (EC 1.5.7.-) from Pseudomonas fluorescens FW300-N2E2
    91% identity, 100% coverage of query (1204 bits)

AO353_07705 DgcB Dimethylglycine demethylase subunit B (EC 1.5.3.-) from Pseudomonas fluorescens FW300-N2E3
    91% identity, 100% coverage of query (1204 bits)

ETFFR_CHRSD / Q1QYW0 Probable membrane-anchored ferredoxin csal_0991; Transmembrane clostridial-type ferredoxin; EC 1.-.-.- from Chromohalobacter salexigens (strain ATCC BAA-138 / DSM 3043 / CIP 106854 / NCIMB 13768 / 1H11) (see paper)
    72% identity, 100% coverage of query (926 bits)

Build an alignment

Build an alignment for GFF5121 and 3 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory