Searching for up to 100 curated homologs for GFF5410 FitnessBrowser__WCS417:GFF5410 (357 a.a.)
Found high-coverage hits (≥70%) to 90 curated proteins.
You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.
ALR_PSETA / B9WZ64 Alanine racemase; EC 5.1.1.1 from Pseudomonas taetrolens (see paper)
82% identity, 99% coverage of query (600 bits)
dadX / Q88CB2 alanine racemase (EC 5.1.1.10) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) (see 7 papers)
DADX_PSEPK / Q88CB2 Alanine racemase, catabolic; EC 5.1.1.1 from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) (see paper)
81% identity, 99% coverage of query (595 bits)
1rcqA / Q9HTQ2 The 1.45 a crystal structure of alanine racemase from a pathogenic bacterium, pseudomonas aeruginosa, contains both internal and external aldimine forms (see paper)
dadX / AAD47081.1 catabolic alanine racemase DadX from Pseudomonas aeruginosa (see paper)
73% identity, 100% coverage of query (541 bits)
ALR2_PSEAE / Q9HTQ2 Alanine racemase, catabolic; EC 5.1.1.1 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see 2 papers)
Q9HTQ2 alanine racemase (EC 5.1.1.1) from Pseudomonas aeruginosa (see 2 papers)
73% identity, 100% coverage of query (541 bits)
DadB / b1190 alanine racemase 2 (EC 5.1.1.1) from Escherichia coli K-12 substr. MG1655 (see 3 papers)
dadX / P29012 alanine racemase 2 (EC 5.1.1.10) from Escherichia coli (strain K12) (see 26 papers)
ALR2_ECOLI / P29012 Alanine racemase, catabolic; EC 5.1.1.1 from Escherichia coli (strain K12) (see paper)
50% identity, 98% coverage of query (332 bits)
dadX / AAC36881.1 catabolic alanine racemase from Escherichia coli (see paper)
49% identity, 98% coverage of query (327 bits)
ALR2_SALTY / P06191 Alanine racemase, catabolic; EC 5.1.1.1 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see 2 papers)
48% identity, 98% coverage of query (319 bits)
Q93HP9 alanine racemase (EC 5.1.1.1) from Shigella sonnei (see paper)
48% identity, 97% coverage of query (316 bits)
ALR1_PSEAE / Q9HUN4 Alanine racemase, biosynthetic; EC 5.1.1.1 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
Q9HUN4 alanine racemase (EC 5.1.1.1) from Pseudomonas aeruginosa (see paper)
6a2fA / Q9HUN4 Crystal structure of biosynthetic alanine racemase from pseudomonas aeruginosa (see paper)
49% identity, 100% coverage of query (315 bits)
Alr / b4053 alanine racemase 1 (EC 5.1.1.1) from Escherichia coli K-12 substr. MG1655 (see 2 papers)
alr / P0A6B4 alanine racemase 1 (EC 5.1.1.10) from Escherichia coli (strain K12) (see 25 papers)
ALR1_ECOLI / P0A6B4 Alanine racemase, biosynthetic; EC 5.1.1.1 from Escherichia coli (strain K12) (see paper)
ALR1_SHIFL / P0A6B5 Alanine racemase, biosynthetic; EC 5.1.1.1 from Shigella flexneri (see paper)
P0A6B4 alanine racemase (EC 5.1.1.1) from Escherichia coli (see 3 papers)
P0A6B5 alanine racemase (EC 5.1.1.1) from Shigella flexneri (see paper)
P0A6B6 alanine racemase (EC 5.1.1.1) from Shigella boydii (see paper)
47% identity, 97% coverage of query (315 bits)
2rjhA Crystal structure of biosynthetic alaine racemase in d-cycloserine- bound form from escherichia coli
47% identity, 97% coverage of query (315 bits)
alr / AAD47082.1 biosynthetic alanine racemase from Pseudomonas aeruginosa (see paper)
49% identity, 100% coverage of query (314 bits)
Q932V0 alanine racemase (EC 5.1.1.1) from Shigella dysenteriae (see paper)
47% identity, 97% coverage of query (313 bits)
3b8tA / P0A6B4 Crystal structure of escherichia coli alaine racemase mutant p219a (see paper)
47% identity, 97% coverage of query (311 bits)
4xbjA Y274f alanine racemase from e. Coli inhibited by l-ala-p
47% identity, 96% coverage of query (311 bits)
ALR_VIBCH / Q9KUY6 Alanine racemase; EC 5.1.1.1 from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (see paper)
46% identity, 97% coverage of query (310 bits)
Q62JA4 alanine racemase (EC 5.1.1.1) from Burkholderia mallei (see paper)
Q63SZ2 alanine racemase (EC 5.1.1.1) from Burkholderia pseudomallei (see paper)
46% identity, 98% coverage of query (305 bits)
ALR1_SALTY / P0A1A3 Alanine racemase, biosynthetic; EC 5.1.1.1 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
alr / GI|153865 alanine racemase, biosynthetic; EC 5.1.1.1 from Salmonella enterica subsp. enterica serovar Typhimurium (see 3 papers)
46% identity, 97% coverage of query (304 bits)
Q63ME6 alanine racemase (EC 5.1.1.1) from Burkholderia pseudomallei (see paper)
49% identity, 98% coverage of query (300 bits)
A0KL98 alanine racemase (EC 5.1.1.1) from Aeromonas hydrophila subsp. hydrophila (see paper)
44% identity, 97% coverage of query (292 bits)
ALR1_SCHPO / O59828 Alanine racemase, catabolic; EC 5.1.1.1 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
O59828 alanine racemase (EC 5.1.1.1) from Schizosaccharomyces pombe (see paper)
alr1 / GI|3136037 alanine racemase Alr1; EC 5.1.1.1 from Schizosaccharomyces pombe (see 2 papers)
42% identity, 99% coverage of query (289 bits)
P45257 alanine racemase (EC 5.1.1.1) from Haemophilus influenzae (see paper)
41% identity, 100% coverage of query (269 bits)
D0C5Y6 alanine racemase (EC 5.1.1.1) from Acinetobacter baumannii (see paper)
40% identity, 98% coverage of query (259 bits)
Q8R860 alanine racemase (EC 5.1.1.1) from Caldanaerobacter subterraneus subsp. tengcongensis (see paper)
35% identity, 99% coverage of query (207 bits)
Q1WV14 alanine racemase (EC 5.1.1.1) from Ligilactobacillus salivarius (see paper)
36% identity, 99% coverage of query (200 bits)
3e5pB / Q837J0 Crystal structure of alanine racemase from e.Faecalis (see paper)
36% identity, 99% coverage of query (198 bits)
Q8DSF4 alanine racemase (EC 5.1.1.1) from Streptococcus mutans serotype c (see 2 papers)
38% identity, 99% coverage of query (198 bits)
3e6eA Crystal structure of alanine racemase from e.Faecalis complex with cycloserine
36% identity, 99% coverage of query (198 bits)
ALR_METMP / Q6LX41 Alanine racemase; EC 5.1.1.1 from Methanococcus maripaludis (strain S2 / LL) (see paper)
35% identity, 99% coverage of query (196 bits)
ALR_STRPN / P0A2W8 Alanine racemase; EC 5.1.1.1 from Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) (see paper)
P0A2W8 alanine racemase (EC 5.1.1.1) from Streptococcus pneumoniae (see 2 papers)
39% identity, 99% coverage of query (196 bits)
Q8RAK6 alanine racemase (EC 5.1.1.1) from Caldanaerobacter subterraneus subsp. tengcongensis (see 2 papers)
33% identity, 99% coverage of query (190 bits)
4y2wA / Q8RAK6 Crystal structure of a thermostable alanine racemase from thermoanaerobacter tengcongensis mb4 (see paper)
33% identity, 99% coverage of query (190 bits)
Q1XG01 alanine racemase (EC 5.1.1.1) from Helicobacter pylori (see 2 papers)
32% identity, 99% coverage of query (177 bits)
ALR_PERPY / Q9S5V6 Alanine racemase; EC 5.1.1.1 from Peribacillus psychrosaccharolyticus (Bacillus psychrosaccharolyticus) (see paper)
Q9S5V6 alanine racemase (EC 5.1.1.1) from Peribacillus psychrosaccharolyticus (see paper)
ala / GB|BAA76373.1 alanine racemase; EC 5.1.1.1 from Bacillus psychrosaccharolyticus (see paper)
36% identity, 99% coverage of query (177 bits)
6sczA / P9WQA9 Mycobacterium tuberculosis alanine racemase inhibited by dcs (see paper)
37% identity, 99% coverage of query (174 bits)
ALR_MYCTU / P9WQA9 Alanine racemase; EC 5.1.1.1 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see 2 papers)
P9WQA9 alanine racemase (EC 5.1.1.1) from Mycobacterium tuberculosis (see 4 papers)
37% identity, 99% coverage of query (174 bits)
1xfcA The 1.9 a crystal structure of alanine racemase from mycobacterium tuberculosis contains a conserved entryway into the active site
37% identity, 99% coverage of query (170 bits)
7xllA / A0A2L0E502 Alanine racemase from lactobacillus sakei uonuma-1. (see paper)
35% identity, 99% coverage of query (169 bits)
5fagA / O86786 Alanine racemase from streptomyces coelicolor a3(2) with bound propionate inhibitor (see paper)
37% identity, 98% coverage of query (165 bits)
O86786 alanine racemase (EC 5.1.1.1) from Streptomyces coelicolor (see paper)
37% identity, 98% coverage of query (165 bits)
ALR1_STAAM / P63479 Alanine racemase 1; EC 5.1.1.1 from Staphylococcus aureus (strain Mu50 / ATCC 700699) (see paper)
P63479 alanine racemase (EC 5.1.1.1) from Staphylococcus aureus (see paper)
34% identity, 100% coverage of query (165 bits)
5fajA Alanine racemase from streptomyces coelicolor a3(2) in complex with d- cycloserine
37% identity, 98% coverage of query (165 bits)
6g59A / P63479 Structure of the alanine racemase from staphylococcus aureus in complex with an pyridoxal-6- phosphate derivative (see paper)
34% identity, 100% coverage of query (164 bits)
5yycA / D3FSP1 Crystal structure of alanine racemase from bacillus pseudofirmus (of4) (see paper)
33% identity, 100% coverage of query (164 bits)
Q180W0 alanine racemase (EC 5.1.1.1) from Clostridioides difficile (see 2 papers)
32% identity, 99% coverage of query (164 bits)
6g58A Structure of the alanine racemase from staphylococcus aureus in complex with a pyridoxal 5' phosphate-derivative
34% identity, 100% coverage of query (164 bits)
P94494 alanine racemase (EC 5.1.1.1) from Bacillus subtilis (see paper)
33% identity, 97% coverage of query (161 bits)
5irpA / P94494 Crystal structure of the alanine racemase bsu17640 from bacillus subtilis (see paper)
33% identity, 97% coverage of query (161 bits)
6q70A Crystal structure of the alanine racemase bsu17640 from bacillus subtilis in the presence of hepes
33% identity, 97% coverage of query (161 bits)
ALR_CORGL / Q8RSU9 Alanine racemase; EC 5.1.1.1 from Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025)
33% identity, 95% coverage of query (157 bits)
ALR_AQUPY / Q9RER4 Alanine racemase; EC 5.1.1.1 from Aquifex pyrophilus
31% identity, 99% coverage of query (156 bits)
1vfsA / Q65YW7 Crystal structure of d-cycloserine-bound form of alanine racemase from d-cycloserine-producing streptomyces lavendulae (see paper)
36% identity, 98% coverage of query (155 bits)
1vfhA Crystal structure of alanine racemase from d-cycloserine producing streptomyces lavendulae
36% identity, 98% coverage of query (155 bits)
vanT / Q9X3P3 serine/alanine racemase monomer (EC 5.1.1.10) from Enterococcus gallinarum (see 2 papers)
VANT_ENTGA / Q9X3P3 Serine/alanine racemase; Vancomycin C-type resistance protein VanT; EC 5.1.1.-; EC 5.1.1.1 from Enterococcus gallinarum (see 2 papers)
32% identity, 94% coverage of query (154 bits)
2vd8A / A0A6L7HC45 The crystal structure of alanine racemase from bacillus anthracis (ba0252) (see paper)
32% identity, 97% coverage of query (150 bits)
ALR_MYCAV / Q9L888 Alanine racemase; EC 5.1.1.1 from Mycobacterium avium (see paper)
34% identity, 99% coverage of query (150 bits)
4lusB Alanine racemase [clostridium difficile 630]
31% identity, 99% coverage of query (150 bits)
2vd9A The crystal structure of alanine racemase from bacillus anthracis (ba0252) with bound l-ala-p
32% identity, 97% coverage of query (150 bits)
1epvA / P10724 Alanine racemase with bound inhibitor derived from d- cycloserine (see paper)
34% identity, 99% coverage of query (149 bits)
ALR_MYCSM / P94967 Alanine racemase; EC 5.1.1.1 from Mycolicibacterium smegmatis (Mycobacterium smegmatis) (see paper)
35% identity, 98% coverage of query (149 bits)
ala / PDB|1SFT_A alanine racemase from Geobacillus stearothermophilus (see 2 papers)
34% identity, 99% coverage of query (149 bits)
ALR_GEOSE / P10724 Alanine racemase; EC 5.1.1.1 from Geobacillus stearothermophilus (Bacillus stearothermophilus) (see 8 papers)
P10724 alanine racemase (EC 5.1.1.1) from Geobacillus stearothermophilus (see 11 papers)
ala alanine racemase; EC 5.1.1.1 from Geobacillus stearothermophilus (see 8 papers)
34% identity, 99% coverage of query (149 bits)
1l6gA Alanine racemase bound with n-(5'-phosphopyridoxyl)-d-alanine
34% identity, 99% coverage of query (149 bits)
1l6fA Alanine racemase bound with n-(5'-phosphopyridoxyl)-l-alanine
34% identity, 99% coverage of query (149 bits)
1sftA Alanine racemase
34% identity, 99% coverage of query (149 bits)
1bd0A Alanine racemase complexed with alanine phosphonate
34% identity, 99% coverage of query (149 bits)
1ftxA Crystal structure of alanine racemase in complex with d-alanine phosphonate
34% identity, 99% coverage of query (149 bits)
Q208U6 alanine racemase (EC 5.1.1.1) from Bacillus thuringiensis (see paper)
32% identity, 97% coverage of query (148 bits)
1xqlA Effect of a y265f mutant on the transamination based cycloserine inactivation of alanine racemase
34% identity, 99% coverage of query (148 bits)
1xqkA Effect of a y265f mutant on the transamination based cycloserine inactivation of alanine racemase
34% identity, 99% coverage of query (148 bits)
ala / PDB|1NIU_A alanine racemase from Geobacillus stearothermophilus (see 3 papers)
34% identity, 99% coverage of query (147 bits)
4lutA / Q180W0 Alanine racemase [clostridium difficile 630] complex with cycloserine (see paper)
31% identity, 99% coverage of query (145 bits)
P10725 alanine racemase (EC 5.1.1.1) from Bacillus subtilis (see paper)
33% identity, 99% coverage of query (145 bits)
2dy3D / Q8RSU9 Crystal structure of alanine racemase from corynebacterium glutamicum
32% identity, 95% coverage of query (144 bits)
Q04DI1 alanine racemase (EC 5.1.1.1) from Oenococcus oeni (see paper)
30% identity, 99% coverage of query (132 bits)
4a3qA / P63479 The 2.15 angstrom resolution crystal structure of staphylococcus aureus alanine racemase (see paper)
31% identity, 100% coverage of query (128 bits)
Build an alignment for GFF5410 and 76 homologs with ≥ 30% identity
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LYSR_OENOB / Q04HB7 Lysine racemase; EC 5.1.1.5 from Oenococcus oeni (strain ATCC BAA-331 / PSU-1) (see 2 papers)
Q04HB7 lysine racemase (EC 5.1.1.5) from Oenococcus oeni (see paper)
28% identity, 91% coverage of query (127 bits)
3co8A / Q04HB7 Crystal structure of alanine racemase from oenococcus oeni (see paper)
27% identity, 91% coverage of query (123 bits)
4fs9A / I6LNY0 Complex structure of a broad specificity amino acid racemase (bar) within the reactive intermediate (see paper)
32% identity, 96% coverage of query (119 bits)
BSR_PSEPU / I6LNY0 Broad specificity amino-acid racemase; EC 5.1.1.10 from Pseudomonas putida (Arthrobacter siderocapsulatus) (see 2 papers)
32% identity, 96% coverage of query (118 bits)
alr / Q88GJ9 amino acid racemase (EC 5.1.1.10) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) (see 2 papers)
BSR_PSEPK / Q88GJ9 Broad specificity amino-acid racemase; Broad spectrum racemase; EC 5.1.1.10 from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) (see 2 papers)
32% identity, 96% coverage of query (116 bits)
5zl6A / Q03Z32 Histidine racemase from leuconostoc mesenteroides subsp. Sake nbrc 102480 (see paper)
30% identity, 90% coverage of query (113 bits)
Q03Z32 histidine racemase (EC 5.1.1.24) from Leuconostoc mesenteroides subsp. mesenteroides (see paper)
30% identity, 90% coverage of query (111 bits)
4bf5A / A0KLG5 Structure of broad spectrum racemase from aeromonas hydrophila (see paper)
27% identity, 89% coverage of query (104 bits)
BSR_AERHH / A0KLG5 Broad specificity amino-acid racemase; Broad spectrum racemase; EC 5.1.1.10 from Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049) (see paper)
27% identity, 89% coverage of query (104 bits)
BSR_PSETA / I0J1I6 Broad specificity amino-acid racemase; Arginine racemase; Broad substrate specificity racemase; EC 5.1.1.10 from Pseudomonas taetrolens (see 2 papers)
I0J1I6 amino-acid racemase (EC 5.1.1.10) from Pseudomonas taetrolens (see paper)
30% identity, 96% coverage of query (103 bits)
LYR_PROMI / M4GGR9 Lysine racemase; EC 5.1.1.5 from Proteus mirabilis (see paper)
M4GGR9 lysine racemase (EC 5.1.1.5) from Proteus mirabilis (see paper)
27% identity, 95% coverage of query (97.8 bits)
4beuA / Q9KSE5 Structure of vibrio cholerae broad spectrum racemase (see paper)
26% identity, 90% coverage of query (92.8 bits)
B9WYE8 alanine racemase (EC 5.1.1.1) from Penaeus japonicus (see paper)
25% identity, 99% coverage of query (92.8 bits)
bsrV / Q9KSE5 broad specificity amino-acid racemase (EC 5.1.1.10) from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (see 4 papers)
BSR_VIBCH / Q9KSE5 Broad specificity amino-acid racemase; Broad spectrum racemase; EC 5.1.1.10 from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (see 3 papers)
26% identity, 90% coverage of query (92.4 bits)
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Lawrence Berkeley National Laboratory