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Searching for up to 100 curated homologs for GFF575 FitnessBrowser__WCS417:GFF575 (198 a.a.)

Found high-coverage hits (≥70%) to 4 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

TC 2.A.95.1.4 / Q8J305 The SnatA carrier. Transports glycine, L-alanine, L-serine, L-threonine and a variety of neutral L-amino acids from Thermococcus sp. (strain KS-1) (see paper)
snatA / BAC53669.1 small neutral amino acid transporter A from Thermococcus sp. JCM 11816 (see paper)
    34% identity, 97% coverage of query (100 bits)

Build an alignment

Build an alignment for GFF575 and 1 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

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Change minimum %identity:

Additional hits (identity < 30%)

YchE / b1242 MarC family putative inner membrane protein YchE from Escherichia coli K-12 substr. MG1655 (see 3 papers)
    27% identity, 96% coverage of query (86.3 bits)

YdeC / b1529 inner membrane protein MarC from Escherichia coli K-12 substr. MG1655 (see 6 papers)
TC 2.A.95.1.1 / P0AEY1 MarC or YdeB of 221 aas and 6 TMSs. The role of MarC in MDR is controversial from Escherichia coli (see 7 papers)
marC / RF|NP_416046 UPF0056 inner membrane protein marC from Escherichia coli K12 (see paper)
    26% identity, 89% coverage of query (66.2 bits)

YhgN / b3434 MarC family putative inner membrane protein YhgN from Escherichia coli K-12 substr. MG1655 (see 3 papers)
    24% identity, 98% coverage of query (66.2 bits)

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory