Sites on a Tree

 

Searching for up to 100 curated homologs for GFF772 FitnessBrowser__Phaeo:GFF772 (450 a.a.)

Found high-coverage hits (≥70%) to 3 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

Dshi_1652 glucose/maltose/trehalose/sucrose ABC transporter, substrate-binding component from Dinoroseobacter shibae DFL-12
    66% identity, 100% coverage of query (609 bits)

SMc03061 ABC transporter for D-maltose/D-trehalose/sucrose, substrate-binding component (AglE) from Sinorhizobium meliloti 1021
TC 3.A.1.1.8 / Q9Z3R5 AglE aka R00695 aka SMC03061, component of Sucrose/maltose/trehalose porter (sucrose-inducible) from Rhizobium meliloti (Sinorhizobium meliloti) (see 2 papers)
    62% identity, 100% coverage of query (582 bits)

GGTB_SYNY3 / Q55471 Osmoprotective compounds-binding protein GgtB from Synechocystis sp. (strain PCC 6803 / Kazusa) (see paper)
TC 3.A.1.1.32 / Q55471 Slr0529 protein, component of The glucosylglycerol uptake transporter (functions in osmoprotection and also transports sucrose and trehalose (Mikkat and Hagemann, 2000) (most similar to 3.A.1.1.8) from Synechocystis sp. (strain PCC 6803) (see paper)
    44% identity, 89% coverage of query (343 bits)

Build an alignment

Build an alignment for GFF772 and 3 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory