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Searching for up to 100 curated homologs for GFF805 FitnessBrowser__psRCH2:GFF805 (104 a.a.)

Found high-coverage hits (≥70%) to 18 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

1cchA / P00101 The solution conformation of cytochromE C-551 from p.Stutzeri zobell determined by nmr+ (see paper)
    98% identity, 79% coverage of query (162 bits)

6kq1A Crystal structure of cytochrome c551 from pseudomonas sp. Strain mt-1.
    90% identity, 79% coverage of query (151 bits)

1corA / P00101 Investigation of the solution conformation of cytochromE C-551 from pseudomonas stutzeri (see paper)
    85% identity, 79% coverage of query (146 bits)

P00099 Cytochrome c-551; Cytochrome C8; Cytochrome c551 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
    63% identity, 100% coverage of query (128 bits)

351cA / P00099 Structure of cytochrome c551 from p. Aeruginosa refined at 1.6 angstroms resolution and comparison of the two redox forms (see paper)
    71% identity, 79% coverage of query (121 bits)

2exvA Crystal structure of the f7a mutant of the cytochrome c551 from pseudomonas aeruginosa
    70% identity, 79% coverage of query (117 bits)

5xecC / P00099,P15452 Heterodimer constructed from pa cyt c551-ht cyt c552 and ht cyt c552- pa cyt c551 chimeric proteins (see paper)
    68% identity, 76% coverage of query (109 bits)

5xecA / P00099,P15452 Heterodimer constructed from pa cyt c551-ht cyt c552 and ht cyt c552- pa cyt c551 chimeric proteins (see paper)
    59% identity, 79% coverage of query (102 bits)

1a56A / P95339 Primary sequence and solution conformation of ferricytochromE C-552 from nitrosomonas europaea, nmr, mean structure refined with explicit hydrogen bond constraints (see paper)
    59% identity, 74% coverage of query (91.7 bits)

5aurA / P15452 Hydrogenobacter thermophilus cytochrome c552 dimer formed by domain swapping at n-terminal region (see paper)
    54% identity, 76% coverage of query (85.5 bits)

2d0sA / Q76IQ6 Crystal structure of the cytochrome c552 from moderate thermophilic bacterium, hydrogenophilus thermoluteolus (see paper)
    49% identity, 76% coverage of query (79.0 bits)

Echvi_1841 predicted cytochrome c component of periplasmic glucoside 3-dehydrogenase (EC 1.1.99.13) from Echinicola vietnamensis KMM 6221, DSM 17526
    43% identity, 78% coverage of query (76.6 bits)

cyc8H / BAJ16239.1 soluble cytochrome high-potential c8 (c-551) from Rubrivivax gelatinosus (see 2 papers)
    38% identity, 95% coverage of query (69.7 bits)

nirM / BAJ16231.1 NirM from Rubrivivax gelatinosus (see 2 papers)
    38% identity, 97% coverage of query (63.5 bits)

CA265_RS15360 predicted cytochrome c component of periplasmic glucoside 3-dehydrogenase (EC 1.1.99.13) from Pedobacter sp. GW460-11-11-14-LB5
    37% identity, 77% coverage of query (62.0 bits)

3x15A / O67504 Dimeric aquifex aeolicus cytochrome c555 (see paper)
    34% identity, 78% coverage of query (49.7 bits)

TC 5.B.5.1.2 / D5CN26 Cytochrome c class I, component of Four component transenvelope ferrous oxidase, CymA/MtoA/MtoB/MtoD from Sideroxydans lithotrophicus (strain ES-1)
    30% identity, 92% coverage of query (43.1 bits)

4xxlA / D5CN26 Crystal structure of class 1 cytochrome mtod from sideroxydans lithotrophicus es-1 (see paper)
    31% identity, 75% coverage of query (41.2 bits)

Build an alignment

Build an alignment for GFF805 and 18 homologs with ≥ 30% identity

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory