Searching for up to 100 curated homologs for GFF90 FitnessBrowser__Phaeo:GFF90 (207 a.a.)

Found high-coverage hits (≥70%) to 15 curated proteins.

Removed hits that are identical to the query, leaving 14

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

TC 1.A.62.2.4 / A4WTL9 TRIC family homologue of 213 aas and 7 TMSs; it's high resolution 3-d structure is known (PDB# 5H36). TRIC channels are implicated in Ca2+ signaling and homeostasis from Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3)
    44% identity, 100% coverage of query (155 bits)

Shewana3_1204 putative transporter, required for glycine and L-alanine utilization from Shewanella sp. ANA-3
    33% identity, 93% coverage of query (116 bits)

SO3342 putative transporter, required for L-alanine utilization from Shewanella oneidensis MR-1
    33% identity, 93% coverage of query (115 bits)

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Build an alignment for GFF90 and 3 homologs with ≥ 30% identity

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Additional hits (identity < 30%)

TC 1.A.62.2.1 / A0M015 Bacterial TRIC family homologue from Gramella forsetii (strain KT0803) (see paper)
    29% identity, 100% coverage of query (110 bits)

AO353_13110 putative transporter, required for glycine utilization from Pseudomonas fluorescens FW300-N2E3
    34% identity, 89% coverage of query (108 bits)

Psest_1636 putative transporter, required for glycine utilization from Pseudomonas stutzeri RCH2
    35% identity, 93% coverage of query (107 bits)

PfGW456L13_161 putative transporter, required for glycine utilization from Pseudomonas fluorescens GW456-L13
    32% identity, 96% coverage of query (106 bits)

PS417_02455 putative transporter, required for glycine utilization from Pseudomonas simiae WCS417
    32% identity, 89% coverage of query (104 bits)

SO1319 putative transporter, required for glycine utilization from Shewanella oneidensis MR-1
    33% identity, 98% coverage of query (104 bits)

Pf6N2E2_3621 putative transporter, required for glycine utilization from Pseudomonas fluorescens FW300-N2E2
    32% identity, 96% coverage of query (103 bits)

YadS / b0157 PF03458 family protein YadS from Escherichia coli K-12 substr. MG1655 (see 2 papers)
    34% identity, 94% coverage of query (97.4 bits)

YicG / b3646 PF03458 family inner membrane protein YicG from Escherichia coli K-12 substr. MG1655 (see 2 papers)
    37% identity, 70% coverage of query (94.0 bits)

TC 1.A.62.3.1 / Q981D4 Archaeal TRIC family homologue of 205 aas and 7 TMSs from Sulfolobus solfataricus (see paper)
    27% identity, 95% coverage of query (77.8 bits)

TC 1.A.62.3.2 / Q9RKM3 UPF0126 of 7 TMSs. Adjacent to genes encoding a putative oligopeptide ABC uptake permease that controls sporulation and actinorhodin production (TC#3.A.1.5.34) from Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
    33% identity, 97% coverage of query (65.9 bits)

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