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Searching for up to 100 curated homologs for GFF967 FitnessBrowser__WCS417:GFF967 (393 a.a.)

Found high-coverage hits (≥70%) to 5 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

Pf6N2E2_5403 ABC transporter for D-Alanine, permease component 2 from Pseudomonas fluorescens FW300-N2E2
    90% identity, 95% coverage of query (659 bits)

YhdX / b3269 putative ABC transporter membrane subunit YhdX from Escherichia coli K-12 substr. MG1655 (see 4 papers)
    62% identity, 100% coverage of query (471 bits)

TC 3.A.1.3.8 / Q52813 AapQ, component of General L-amino acid porter; transports basic and acidic amino acids preferentially, but also transports aliphatic amino acids (catalyzes both uptake and efflux) from Rhizobium leguminosarum (biovar viciae) (see 2 papers)
aapQ / CAA57934.1 general amino acid ABC type transporter from Rhizobium leguminosarum (see paper)
    51% identity, 96% coverage of query (369 bits)

SMc02119 ABC transporter for L-Glutamine, L-Histidine, and other L-amino acids, permease component 1 from Sinorhizobium meliloti 1021
    49% identity, 98% coverage of query (353 bits)

TC 3.A.1.3.7 / Q52664 BztB, component of Glutamate/glutamine/aspartate/asparagine porter from Rhodobacter capsulatus (Rhodopseudomonas capsulata) (see paper)
bztB / GB|AAB17887.1 glutamate/glutamine/aspartate/asparagine transport system permease protein BztB from Rhodobacter capsulatus (see paper)
    43% identity, 96% coverage of query (302 bits)

Build an alignment

Build an alignment for GFF967 and 5 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory