Sites on a Tree

 

Searching for up to 100 curated homologs for GFF971 PS417_04925 MFS transporter (421 a.a.)

Found high-coverage hits (≥70%) to 3 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

NimT / b1791 2-nitroimidazole exporter from Escherichia coli K-12 substr. MG1655 (see 4 papers)
nimT / P76242 2-nitroimidazole exporter from Escherichia coli (strain K12) (see 5 papers)
NIMT_ECOLI / P76242 2-nitroimidazole transporter from Escherichia coli (strain K12) (see 2 papers)
TC 2.A.1.17.3 / P76242 Inner membrane transport protein, NimT or YeaN of 393 aas and 12 TMSs from Escherichia coli (strain K12) (see 4 papers)
    40% identity, 90% coverage of query (211 bits)

CynX / b0341 cyanate transporter from Escherichia coli K-12 substr. MG1655 (see 5 papers)
CYNX_ECOLI / P17583 Cyanate transport protein CynX from Escherichia coli (strain K12) (see paper)
TC 2.A.1.17.1 / P17583 Cyanate transport system, CynT from Escherichia coli (see 4 papers)
    32% identity, 83% coverage of query (127 bits)

TC 2.A.1.17.2 / Q04FN1 Glucose transporter, OEOE_0819. Does not transport fructose from Oenococcus oeni (strain BAA-331 / PSU-1) (see paper)
    30% identity, 82% coverage of query (110 bits)

Build an alignment

Build an alignment for GFF971 and 3 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory