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Searching for up to 100 curated homologs for GFF997 FitnessBrowser__Phaeo:GFF997 (388 a.a.)

Found high-coverage hits (≥70%) to 24 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

Q92Y75 acetylornithine deacetylase (EC 3.5.1.16) from Sinorhizobium meliloti (see paper)
    36% identity, 97% coverage of query (219 bits)

ArgE / b3957 acetylornithine deacetylase (EC 3.5.1.16) from Escherichia coli K-12 substr. MG1655 (see 6 papers)
argE / P23908 acetylornithine deacetylase (EC 3.5.1.16) from Escherichia coli (strain K12) (see 5 papers)
ARGE_ECOLI / P23908 Acetylornithine deacetylase; AO; Acetylornithinase; N-acetylornithinase; NAO; EC 3.5.1.16 from Escherichia coli (strain K12) (see 2 papers)
    31% identity, 99% coverage of query (150 bits)

argE / CAB95019.1 acetylornithinase (n2-acetyl-l-ornithine amidohydrolase) from Moritella abyssi (see paper)
    30% identity, 97% coverage of query (147 bits)

7rsfA / P23908 Acetylornithine deacetylase from escherichia coli
    31% identity, 97% coverage of query (146 bits)

Build an alignment

Build an alignment for GFF997 and 4 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

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Change minimum %identity:

Additional hits (identity < 30%)

Echvi_3851 N-succinylcitrulline desuccinylase (EC 3.5.1.-) from Echinicola vietnamensis KMM 6221, DSM 17526
    24% identity, 95% coverage of query (88.2 bits)

FAPD_BACSU / O31724 N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine deformylase; Formylaminopyrimidine deformylase; Amidohydrolase YlmB; EC 3.5.1.- from Bacillus subtilis (strain 168) (see paper)
    27% identity, 94% coverage of query (83.2 bits)

ylmB / Q9K9G9 N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine deformylase from Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) (see paper)
FAPD_HALH5 / Q9K9G9 N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine deformylase; Formylaminopyrimidine deformylase; Amidohydrolase YlmB; EC 3.5.1.- from Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) (Bacillus halodurans) (see paper)
    24% identity, 94% coverage of query (82.0 bits)

7t1qA / A3M8H2 Crystal structure of the succinyl-diaminopimelate desuccinylase (dape) from acinetobacter baumannii in complex with succinic acid
    27% identity, 83% coverage of query (73.2 bits)

N515DRAFT_3767 N-acetylcitrulline deacetylase (EC 3.5.1.-) from Dyella japonica UNC79MFTsu3.2
    27% identity, 80% coverage of query (68.9 bits)

7uoiA / A0A1S8KJG1 Crystallographic structure of dape from enterococcus faecium
    25% identity, 78% coverage of query (64.7 bits)

7lgpB / P0AED8 Dape enzyme from shigella flexneri
    24% identity, 82% coverage of query (63.9 bits)

MsgB / b2472 succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) from Escherichia coli K-12 substr. MG1655 (see 4 papers)
dapE / P0AED7 succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) from Escherichia coli (strain K12) (see paper)
DAPE_ECOLI / P0AED7 Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18 from Escherichia coli (strain K12) (see paper)
dapE / RF|NP_416967 succinyl-diaminopimelate desuccinylase; EC 3.5.1.18 from Escherichia coli K12 (see 7 papers)
    24% identity, 82% coverage of query (63.9 bits)

4o23A / Q9JYL2 Crystal structure of mono-zinc form of succinyl diaminopimelate desuccinylase from neisseria meningitidis mc58 (see paper)
    26% identity, 82% coverage of query (63.9 bits)

DAPE_NEIMB / Q9JYL2 Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18 from Neisseria meningitidis serogroup B (strain MC58) (see paper)
Q9JYL2 succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) from Neisseria meningitidis (see paper)
    26% identity, 82% coverage of query (63.5 bits)

argE / Q8P8J5 acetylcitrulline deacetylase subunit (EC 3.5.1.16) from Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25) (see paper)
ACDAS_XANCP / Q8P8J5 N-acetyl-L-citrulline deacetylase; ACDase; Acetylcitrulline deacetylase; EC 3.5.1.- from Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25) (see 3 papers)
    26% identity, 77% coverage of query (63.5 bits)

4pqaA Crystal structure of succinyl-diaminopimelate desuccinylase from neisseria meningitidis mc58 in complex with the inhibitor captopril
    26% identity, 82% coverage of query (63.5 bits)

DAPE_MYCS2 / A0R2G4 Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18 from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium smegmatis) (see paper)
    25% identity, 97% coverage of query (62.0 bits)

DAPE_SALTY / Q8ZN75 Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; Aspartyl peptidase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
    25% identity, 82% coverage of query (61.2 bits)

2f7vA / Q8P8J5 Structure of acetylcitrulline deacetylase complexed with one co (see paper)
    26% identity, 77% coverage of query (60.8 bits)

DAPE_HELPY / O25002 Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18 from Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori) (see paper)
O25002 succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) from Helicobacter pylori (see paper)
    26% identity, 73% coverage of query (58.9 bits)

A0A219YQV4 N-acyl-aliphatic-L-amino acid amidohydrolase (EC 3.5.1.14) from Helicoverpa assulta (see paper)
    25% identity, 98% coverage of query (58.5 bits)

CA265_RS18500 N-succinylcitrulline desuccinylase (EC 3.5.1.-) from Pedobacter sp. GW460-11-11-14-LB5
    23% identity, 96% coverage of query (57.8 bits)

G8EJ32 N-acyl-aliphatic-L-amino acid amidohydrolase (EC 3.5.1.14) from Heliothis virescens (see paper)
    23% identity, 98% coverage of query (56.2 bits)

Q9C5C4 acetylornithine deacetylase (EC 3.5.1.16) from Arabidopsis thaliana (see 2 papers)
    23% identity, 81% coverage of query (52.4 bits)

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory