Sites on a Tree

 

Searching for up to 100 curated homologs for Ga0059261_1581 FitnessBrowser__Korea:Ga0059261_1581 (604 a.a.)

Found high-coverage hits (≥70%) to 100 curated proteins.

Removed hits that are identical to the query, leaving 99

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

AEV84578.1 acarbose resistent α-amylase (AcbE;ACPL_3683) (EC 3.2.1.1) (see protein)
    44% identity, 99% coverage of query (496 bits)

CAA49759.1 α-amylase (Amy) (EC 3.2.1.1) (see protein)
amy / CAA49759.1 amy from Streptomyces lividans (see paper)
    45% identity, 89% coverage of query (457 bits)

acbE / CAJ81030.1 acarbose resistent alpha-amylase AcbE from Actinoplanes sp. SE50/110 (see 5 papers)
    42% identity, 99% coverage of query (447 bits)

BAE79266.1 6-α-maltosyltransferase (CmmA) (EC 2.4.1.-) (see protein)
    30% identity, 98% coverage of query (204 bits)

AFK08971.1 α-amylase II (Amy2;Gt-AmyII) (EC 3.2.1.1|3.2.1.133) (see protein)
    30% identity, 89% coverage of query (187 bits)

Build an alignment

Build an alignment for Ga0059261_1581 and 5 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

AAA85446.1 multidomain α-amylase / β-amylase (EC 3.2.1.1|3.2.1.2) (see protein)
GB|AAA85446.1 beta-amylase/alpha-amylase; EC 3.2.1.1; EC 3.2.1.2 from Paenibacillus polymyxa (see 4 papers)
    28% identity, 94% coverage of query (178 bits)

P21543 Beta/alpha-amylase; EC 3.2.1.2; EC 3.2.1.1 from Paenibacillus polymyxa (Bacillus polymyxa)
    28% identity, 94% coverage of query (178 bits)

Q8RMG0 cyclomaltodextrin glucanotransferase (EC 2.4.1.19) from Nostoc sp. (see paper)
    27% identity, 80% coverage of query (155 bits)

6wniA / U5CJP3 Crystal structure of clda, the first cyclomaltodextrin glucanotransferase with a three-domain abc distribution
    29% identity, 88% coverage of query (155 bits)

AAS36537.1 alkaline amylase-pullulanase (EC 3.2.1.1|3.2.1.41) (see protein)
    26% identity, 95% coverage of query (153 bits)

BT3704 SusA: alpha-amylase / neopullulanase / cyclomaltodextrinase (EC 3.2.1.135; EC 3.2.1.54) from Bacteroides thetaiotaomicron VPI-5482
SUSA_BACTN / Q8A1G0 Neopullulanase SusA; Starch-utilization system protein A; EC 3.2.1.135 from Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50) (see paper)
AAO78809.1 neopullulanase (SusA;BT3704;BT_3704) (EC 3.2.1.135) (see protein)
    30% identity, 73% coverage of query (153 bits)

EAA64850.1 α-amylase (AmyA;AN2018.2) (EC 3.2.1.1) (see protein)
    28% identity, 84% coverage of query (152 bits)

A0A1P8L1E1 alpha-amylase (EC 3.2.1.1) from Rhizopus arrhizus (see paper)
    27% identity, 78% coverage of query (151 bits)

ADL28123.1 α-amylase (Amy;RoAmy) (EC 3.2.1.1) (see protein)
    27% identity, 78% coverage of query (147 bits)

A0P8W9 cycloisomaltooligosaccharide glucanotransferase (EC 2.4.1.248) from Niallia circulans (see paper)
BAF37283.1 α-1,6-cyclomaltopentaose-forming glucanotransferase (IgtY) (EC 2.4.1.-) (see protein)
    25% identity, 100% coverage of query (145 bits)

AEL33336.1 β-cyclodextrin glucanotransferase (Cgt) (EC 2.4.1.19) (see protein)
    26% identity, 86% coverage of query (141 bits)

ACO70966.1 β-cyclodextrin glucanotransferase (CGTase) (EC 2.4.1.19) (see protein)
    27% identity, 86% coverage of query (141 bits)

P08704 cyclomaltodextrin glucanotransferase (EC 2.4.1.19) from Klebsiella oxytoca (see 2 papers)
AAA25059.1 α-cyclodextrin glucanotransferase (Cgt) (EC 2.4.1.19) (see protein)
    26% identity, 97% coverage of query (141 bits)

6saoA Structural and functional characterisation of three novel fungal amylases with enhanced stability and ph tolerance (see paper)
    25% identity, 94% coverage of query (140 bits)

AEL33337.1 β-cyclodextrin glucanotransferase (Cgt) (EC 2.4.1.19) (see protein)
    26% identity, 83% coverage of query (140 bits)

B1VC16 cyclomaltodextrin glucanotransferase (EC 2.4.1.19) from Paenibacillus pabuli (see paper)
CAO05752.1 β-cyclodextrin glycosyltransferase (CGTase) (EC 2.4.1.19) (see protein)
    28% identity, 81% coverage of query (140 bits)

CDGT_GEOSE / P31797 Cyclomaltodextrin glucanotransferase; Cyclodextrin-glycosyltransferase; CGTase; EC 2.4.1.19 from Geobacillus stearothermophilus (Bacillus stearothermophilus)
P31797 cyclomaltodextrin glucanotransferase (EC 2.4.1.19) from Geobacillus stearothermophilus (see 6 papers)
CAA41770.1 a/β-cyclodextrin glucanotransferase (Cgt;CgtS;Aga2) (EC 2.4.1.19) (see protein)
    27% identity, 91% coverage of query (140 bits)

P30920 cyclomaltodextrin glucanotransferase (EC 2.4.1.19) from Niallia circulans (see 2 papers)
CAA48401.1 β-cyclodextrin glucanotransferase (CGTase) (EC 2.4.1.19) (see protein)
    27% identity, 84% coverage of query (139 bits)

P14014 cyclomaltodextrin glucanotransferase (EC 2.4.1.19) from Bacillus licheniformis (see 2 papers)
CAA33763.1 a/β-cyclodextrin glucanotransferase (CgtA) (EC 2.4.1.19) (see protein)
    27% identity, 86% coverage of query (139 bits)

P31747 cyclomaltodextrin glucanotransferase (EC 2.4.1.19) from Bacillus sp. (in: Bacteria) (see paper)
CAA46901.1 cyclodextrin glucanotransferase (Cgt) (EC 2.4.1.19) (see protein)
    27% identity, 84% coverage of query (138 bits)

O82984 cyclomaltodextrin glucanotransferase (EC 2.4.1.19) from Bacillus sp. (in: Bacteria) (see paper)
BAA31539.1 β-cyclodextrin glucanotransferase (Cgt) (EC 2.4.1.19) (see protein)
    27% identity, 83% coverage of query (138 bits)

CDGT2_NIACI / P43379 Cyclomaltodextrin glucanotransferase; Cyclodextrin-glycosyltransferase; CGTase; EC 2.4.1.19 from Niallia circulans (Bacillus circulans) (see 2 papers)
A0A097CPM3 cyclomaltodextrin glucanotransferase (EC 2.4.1.19) from Niallia circulans (see paper)
P43379 cyclomaltodextrin glucanotransferase (EC 2.4.1.19) from Niallia circulans (see 4 papers)
AIS84204.1 β-cyclodextrin glycosyltransferase (EC 2.4.1.19) (see protein)
CAA55023.1 β-cyclodextrin glucanotransferase (Cgt) (EC 2.4.1.19) (see protein)
    28% identity, 86% coverage of query (138 bits)

P27036 cyclomaltodextrin glucanotransferase (EC 2.4.1.19) from Bacillus ohbensis (see paper)
BAA14289.2 β-cyclodextrin glucanotransferase (Cgt) (EC 2.4.1.19) (see protein)
    27% identity, 89% coverage of query (138 bits)

9cgtA Structure of cyclodextrin glycosyltransferase complexed with a thio- maltopentaose
    26% identity, 83% coverage of query (138 bits)

8cgtA Structure of cyclodextrin glycosyltransferase complexed with a thio- maltohexaose
    26% identity, 83% coverage of query (138 bits)

1cgtA / P30920 Structure of cyclodextrin glycosyltransferase refined at 2.0 angstroms resolution (see paper)
    26% identity, 83% coverage of query (137 bits)

AAD00555.1 β-cyclodextrin glucanotransferase (Cgt;BsCgt) (EC 2.4.1.19) (see protein)
    26% identity, 86% coverage of query (137 bits)

AAZ51683.1 cyclomaltodextrin glucanotransferase (AmyA;M5005_Spy_1065) (EC 2.4.1.19) (see protein)
    27% identity, 86% coverage of query (137 bits)

6cgtA Hoxa complex of cyclodextrin glycosyltransferase mutant
    26% identity, 83% coverage of query (137 bits)

P05618 cyclomaltodextrin glucanotransferase (EC 2.4.1.19) from Bacillus sp. (in: Bacteria) (see 2 papers)
AAA22308.1 β-cyclodextrin glucanotransferase (Cgt) (EC 2.4.1.19) (see protein)
    28% identity, 81% coverage of query (136 bits)

AAQ89599.1 α-amylase (AmyM) (EC 3.2.1.1) (see protein)
    26% identity, 82% coverage of query (136 bits)

AAA22309.1 β-cyclodextrin glucanotransferase (Cgt) (EC 2.4.1.19) (see protein)
    28% identity, 81% coverage of query (136 bits)

1ukqA Crystal structure of cyclodextrin glucanotransferase complexed with a pseudo-maltotetraose derived from acarbose
    28% identity, 81% coverage of query (136 bits)

1i75A Crystal structure of cyclodextrin glucanotransferase from alkalophilic bacillus sp.#1011 complexed with 1-deoxynojirimycin
    28% identity, 81% coverage of query (136 bits)

1cygA / P31797 Cyclodextrin glucanotransferase (E.C.2.4.1.19) (cgtase)
    28% identity, 86% coverage of query (135 bits)

BAA07401.1 α-amylase (EC 3.2.1.1) (see protein)
    28% identity, 86% coverage of query (135 bits)

Q6S3E3 cyclomaltodextrin glucanotransferase (EC 2.4.1.19) from Bacillus sp. (in: Bacteria) (see paper)
AAR32682.1 β-cyclodextrin glucanotransferase (Cgt) (EC 2.4.1.19) (see protein)
    28% identity, 81% coverage of query (135 bits)

Q197W1 cyclomaltodextrin glucanotransferase (EC 2.4.1.19) from Bacillus sp. N-227 (see paper)
Q9F5W3 cyclomaltodextrin glucanotransferase (EC 2.4.1.19) from Niallia circulans (see 2 papers)
AAG31622.1 β-cyclodextrin glucanotransferase (EC 2.4.1.19) (see protein)
    28% identity, 81% coverage of query (135 bits)

1uksA Crystal structure of f183l/f259l mutant cyclodextrin glucanotransferase complexed with a pseudo-maltotetraose derived from acarbose
    28% identity, 81% coverage of query (135 bits)

5cgtA Maltotriose complex of preconditioned cyclodextrin glycosyltransferase mutant
    26% identity, 83% coverage of query (135 bits)

1cguA Catalytic center of cyclodextrin glycosyltransferase derived from x- ray structure analysis combined with site-directed mutagenesis
    26% identity, 83% coverage of query (135 bits)

Q9AIV2 neopullulanase (EC 3.2.1.135) from Geobacillus stearothermophilus (see paper)
AAK15003.1 neopullulanase (EC 3.2.1.135) (see protein)
    26% identity, 93% coverage of query (134 bits)

CAA44454.1 cyclodextrinase (CDase) (EC 3.2.1.54) (see protein)
    24% identity, 93% coverage of query (134 bits)

ABG48762.1 α-amylase (AmyA) (EC 3.2.1.1) (see protein)
    27% identity, 94% coverage of query (134 bits)

1d7fA / P05618 Crystal structure of asparagine 233-replaced cyclodextrin glucanotransferase from alkalophilic bacillus sp. 1011 determined at 1.9 a resolution (see paper)
    28% identity, 81% coverage of query (134 bits)

1dedA Crystal structure of alkalophilic asparagine 233-replaced cyclodextrin glucanotransferase complexed with an inhibitor, acarbose, at 2.0 a resolution
    28% identity, 81% coverage of query (134 bits)

MalS / b3571 α-amylase (EC 3.2.1.1) from Escherichia coli K-12 substr. MG1655 (see 4 papers)
malS / P25718 α-amylase (EC 3.2.1.1) from Escherichia coli (strain K12) (see 4 papers)
AAB18548.1 α-amylase (MalS;b3571) (EC 3.2.1.1) (see protein)
    28% identity, 85% coverage of query (133 bits)

8im8A / P25718 Crystal structure of periplasmic alpha-amylase (mals) from e.Coli (see paper)
    28% identity, 85% coverage of query (133 bits)

P25718 Periplasmic alpha-amylase; 1,4-alpha-D-glucan glucanohydrolase; EC 3.2.1.1 from Escherichia coli (strain K12)
    28% identity, 85% coverage of query (133 bits)

N515DRAFT_3391 Alpha-amylase (EC 3.2.1.1) from Dyella japonica UNC79MFTsu3.2
    27% identity, 86% coverage of query (132 bits)

ADF53136.1 α-amylase (AmyZ;ZPR_2816) (EC 3.2.1.1) (see protein)
    25% identity, 90% coverage of query (132 bits)

RF|XP_001521947.1 alpha-amylase 1 from Magnaporthe grisea 70-15 (see paper)
    27% identity, 98% coverage of query (132 bits)

AAE13949.1 Sequence from patent (EC 3.2.1.1) (see protein)
    27% identity, 74% coverage of query (132 bits)

Echvi_2850 Alpha-amylase (EC 3.2.1.1) from Echinicola vietnamensis KMM 6221, DSM 17526
    25% identity, 79% coverage of query (132 bits)

AAA23219.1 cyclodextrinase (CDase) (EC 3.2.1.54) (see protein)
CDase / AAA23219.1 cyclodextrinase from Thermoanaerobacter thermohydrosulfuricus (see paper)
    26% identity, 86% coverage of query (132 bits)

2taaA / P0C1B3 Structure and possible catalytic residues of taka-amylase a (see paper)
    26% identity, 81% coverage of query (132 bits)

7taaA Family 13 alpha amylase in complex with acarbose
    27% identity, 74% coverage of query (132 bits)

6yqcAAA in complex with alpha-glucosyl epi-cyclophellitol epoxide inhibitor
    27% identity, 74% coverage of query (132 bits)

6yqbAAA in complex with alpha-glucosyl epi-cyclophellitol cyclosulfate inhibitor
    27% identity, 74% coverage of query (132 bits)

6yqaAAA in complex with alpha-glucosyl epi-cyclophellitol aziridine inhibitor
    27% identity, 74% coverage of query (132 bits)

6yq9AAA in complex with alpha-glucosyl epi-cyclophellitol epoxide inhibitor
    27% identity, 74% coverage of query (132 bits)

2gvyA Monoclinic crystal form of aspergillus niger alpha-amylase in complex with maltose at 1.8 a resolution
    27% identity, 74% coverage of query (132 bits)

1dtuA Bacillus circulans strain 251 cyclodextrin glycosyltransferase: a mutant y89d/s146p complexed to an hexasaccharide inhibitor
    28% identity, 81% coverage of query (132 bits)

1cdgA / P43379 Nucleotide sequence and x-ray structure of cyclodextrin glycosyltransferase from bacillus circulans strain 251 in a maltose- dependent crystal form (see paper)
    28% identity, 81% coverage of query (131 bits)

2cxgA Cyclodextrin glycosyltransferase complexed to the inhibitor acarbose
    28% identity, 81% coverage of query (131 bits)

A3F9M7 cyclomaltodextrin glucanotransferase (EC 2.4.1.19) from Bacillus sp. (in: Bacteria) (see paper)
    26% identity, 86% coverage of query (130 bits)

Q59239 cyclomaltodextrin glucanotransferase (EC 2.4.1.19) from Bacillus sp. (in: Bacteria) (see paper)
BAA02380.1 β-cyclodextrin glucanotransferase (EC 2.4.1.19) (see protein)
    26% identity, 92% coverage of query (130 bits)

P17692 cyclomaltodextrin glucanotransferase (EC 2.4.1.19) from Bacillus sp. (in: Bacteria) (see paper)
AAA22239.1 β-cyclomaltodextrin glucanotransferase (Cgt) (EC 2.4.1.19) (see protein)
    27% identity, 86% coverage of query (130 bits)

Q5U9V9 cyclomaltodextrin glucanotransferase (EC 2.4.1.19) from Bacillus sp. (in: Bacteria) (see paper)
AAV38118.2 β-cyclodextrin glucanotransferase (EC 2.4.1.19) (see protein)
    27% identity, 92% coverage of query (130 bits)

EPS26265.1 PDE_01201 (Amy13A) (EC 3.2.1.1) (see protein)
    25% identity, 95% coverage of query (130 bits)

1cxlA Complex between a covalent intermediate and bacillus circulans strain 251 cgtase e257q
    28% identity, 81% coverage of query (130 bits)

6xsvA X-ray structure of a tetragonal crystal form of alpha amylase from aspergillus oryzae (tala-amylase) at 1.65 a resolution
    26% identity, 74% coverage of query (130 bits)

6xsjB X-ray structure of a monoclinic form of alpha amylase from aspergillus at 1.4 a resolution
    26% identity, 74% coverage of query (130 bits)

A0A1L6Z980 alpha-amylase (EC 3.2.1.1) from Aspergillus flavus (see paper)
    25% identity, 82% coverage of query (129 bits)

P31746 cyclomaltodextrin glucanotransferase (EC 2.4.1.19) from Bacillus sp. (in: Bacteria) (see paper)
    26% identity, 89% coverage of query (129 bits)

C4MH58 cyclomaltodextrin glucanotransferase (EC 2.4.1.19) from Niallia circulans (see paper)
ACF42340.2 a/β-cyclodextrin glycosyltransferase (EC 2.4.1.19) (see protein)
    26% identity, 89% coverage of query (129 bits)

Q3HUR2 cyclomaltodextrin glucanotransferase (EC 2.4.1.19) from Pyrococcus furiosus (see paper)
ABA33720.1 β-cyclodextrin glucanotransferase (PfCgt;PF0478;PF0478*) (EC 2.4.1.19) (see protein)
    26% identity, 91% coverage of query (128 bits)

CDGT_THETU / P26827 Cyclomaltodextrin glucanotransferase; Cyclodextrin-glycosyltransferase; CGTase; EC 2.4.1.19 from Thermoanaerobacterium thermosulfurigenes (Clostridium thermosulfurogenes) (see paper)
P26827 cyclomaltodextrin glucanotransferase (EC 2.4.1.19) from Thermoanaerobacterium thermosulfurigenes (see 2 papers)
amyA / AAB00845.1 alpha-cyclodextrin glycosyltransferase from Thermoanaerobacterium thermosulfurigenes (see 4 papers)
    26% identity, 98% coverage of query (128 bits)

BAD06002.1 α-amylase (Amyl I) (EC 3.2.1.1) (see protein)
    27% identity, 72% coverage of query (128 bits)

AEB80431.1 α-amylase (AmyA) (EC 3.2.1.1) (see protein)
BAA22993.1 α-amylase (AsaA) (EC 3.2.1.1) (see protein)
    26% identity, 84% coverage of query (128 bits)

BAD01051.1 α-amylase (AmyA) (EC 3.2.1.1) (see protein)
CAK44871.1 α-amylase A / B (AmyA;AmyB;An05g02100) (EC 3.2.1.1) (see protein)
    27% identity, 72% coverage of query (127 bits)

CAA36967.1 α-amylase B (AmyB) (EC 3.2.1.1) (see protein)
    27% identity, 72% coverage of query (127 bits)

AMYA1_ASPOR / P0C1B3 Alpha-amylase A type-1/2; 1,4-alpha-D-glucan glucanohydrolase; Taka-amylase A; TAA; EC 3.2.1.1 from Aspergillus oryzae (strain ATCC 42149 / RIB 40) (Yellow koji mold) (see 3 papers)
BAE59434.1 α-amylase (Amy1;AmyI;Taα-G1;AO090023000944;AmyA;AmyB) (EC 3.2.1.1) (see protein)
BAE62808.1 α-amylase (Amy2;AmyII;Taα-G2;AO090120000196;AmyA;AmyB) (EC 3.2.1.1) (see protein)
CAA31218.1 α-amylase (AmyB;TAA;Amy1;Amy2;Amy3;Asp o 21;Aspo21) (EC 3.2.1.1) (see protein)
    27% identity, 72% coverage of query (127 bits)

AAF14264.1 α-amylase (Amy1;TAA) (EC 3.2.1.1) (see protein)
BAA95703.1 α-amylase (Amy3;AmyIII;Taα-G3;AO090003001210;AmyA) (EC 3.2.1.1) (see protein)
    26% identity, 72% coverage of query (127 bits)

ADY17981.1 β-cyclodextrin glucanotransferase (Cgt) (EC 2.4.1.19) (see protein)
    26% identity, 92% coverage of query (127 bits)

ACB71089.1 cyclodextrin glucanotransferase (EC 2.4.1.19) (see protein)
    27% identity, 95% coverage of query (127 bits)

W8SKF6 alpha-amylase (EC 3.2.1.1) from Pseudoalteromonas sp. 2-3 (see paper)
    25% identity, 85% coverage of query (127 bits)

CAA36966.1 α-amylase A (AmyA) (EC 3.2.1.1) (see protein)
    27% identity, 72% coverage of query (127 bits)

O52766 cyclomaltodextrin glucanotransferase (EC 2.4.1.19) from Paenibacillus macerans (see 2 papers)
    25% identity, 98% coverage of query (127 bits)

AAW32491.1 α-amylase (AmyA) (EC 3.2.1.1) (see protein)
    26% identity, 85% coverage of query (127 bits)

1eo5A Bacillus circulans strain 251 cyclodextrin glycosyltransferase in complex with maltoheptaose
    27% identity, 81% coverage of query (127 bits)

AAV38117.1 β-cyclodextrin glucanotransferase (EC 2.4.1.19) (see protein)
    26% identity, 92% coverage of query (126 bits)

AMY_ASPUS / P30292 Alpha-amylase; 1,4-alpha-D-glucan glucanohydrolase; EC 3.2.1.1 from Aspergillus usamii (Aspergillus shirousami) (see paper)
BAA01255.1 α-amylase (Amy) (EC 3.2.1.1) (see protein)
    27% identity, 72% coverage of query (126 bits)

P04830 cyclomaltodextrin glucanotransferase (EC 2.4.1.19) from Paenibacillus macerans (see 4 papers)
CAA41773.1 α-cyclodextrin glucanotransferase (CD;Cgt;CgtM) (EC 2.4.1.19) (see protein)
    25% identity, 98% coverage of query (126 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory