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Searching for up to 100 curated homologs for H281DRAFT_01522 FitnessBrowser__Burk376:H281DRAFT_01522 (260 a.a.)

Found high-coverage hits (≥70%) to 100 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

ARGT_SALTY / P02911 Lysine/arginine/ornithine-binding periplasmic protein; LAO-binding protein from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see 6 papers)
argT / RF|NP_461297.1 lysine/arginine/ornithine ABC transporter, periplasmic lysine/arginine/ornithine-binding protein ArgT from Salmonella enterica subsp. enterica serovar Typhimurium (see 4 papers)
    53% identity, 100% coverage of query (287 bits)

BPHYT_RS07735 ABC transporter for L-Arginine, periplasmic substrate-binding component from Burkholderia phytofirmans PsJN
    58% identity, 90% coverage of query (284 bits)

5owfA Structure of a lao-binding protein mutant with glutamine
    56% identity, 90% coverage of query (284 bits)

ArgT / b2310 lysine/arginine/ornithine ABC transporter periplasmic binding protein (EC 7.4.2.1) from Escherichia coli K-12 substr. MG1655 (see 6 papers)
TC 3.A.1.3.1 / TC 3.A.1.3.29 / P09551 ArgT aka B2310, component of Histidine/Arginine/Lysine (basic amino acid) uptake porter, HisJ/ArgT/HisP/HisM/HisQ [R, R, C, M, M, respectively] (Gilson et al. 1982). HisJ binds L-His (preferred), but 1-methyl-L-His and 3-methyl-L-His also bind, while the dipeptide carnosine binds weakly; D-histidine and the histidine degradation products, histamine, urocanic acid and imidazole do not bind. L-Arg, homo-L-Arg, and post-translationally modified methylated Arg-analogs also bind with the exception of symmetric dimethylated-L-Arg. L-Lys and L-Orn show weaker interactions with HisJ and methylated and acetylated Lys variants show poor binding.The carboxylate groups of these amino acids and their variants are essential from Escherichia coli (see 5 papers)
    52% identity, 100% coverage of query (283 bits)

1lafE / P02911 Structural bases for multiple ligand specificity of the periplasmic lysine-, arginine-, ornithine-binding protein (see paper)
    56% identity, 90% coverage of query (283 bits)

1lstA Three-dimensional structures of the periplasmic lysine-, arginine-, ornithine-binding protein with and without a ligand
    56% identity, 90% coverage of query (283 bits)

1lahE Structural bases for multiple ligand specificity of the periplasmic lysine-, arginine-, ornithine-binding protein
    56% identity, 90% coverage of query (283 bits)

1lagE Structural bases for multiple ligand specificity of the periplasmic lysine-, arginine-, ornithine-binding protein
    56% identity, 90% coverage of query (283 bits)

Pf6N2E2_2958 ABC transporter for L-Lysine, periplasmic substrate-binding component from Pseudomonas fluorescens FW300-N2E2
    59% identity, 92% coverage of query (281 bits)

AO356_05495 ABC transporter for L-Lysine, periplasmic substrate-binding component from Pseudomonas fluorescens FW300-N2C3
    59% identity, 92% coverage of query (278 bits)

HisJ / b2309 histidine ABC transporter periplasmic binding protein (EC 7.4.2.1) from Escherichia coli K-12 substr. MG1655 (see 5 papers)
HISJ_ECOLI / P0AEU0 Histidine-binding periplasmic protein; HBP from Escherichia coli (strain K12) (see paper)
TC 3.A.1.3.29 / P0AEU0 Histidine-binding periplasmic protein, component of Histidine/Arginine/Lysine (basic amino acid) uptake porter, HisJ/ArgT/HisP/HisM/HisQ [R, R, C, M, M, respectively] (Gilson et al. 1982). HisJ binds L-His (preferred), but 1-methyl-L-His and 3-methyl-L-His also bind, while the dipeptide carnosine binds weakly; D-histidine and the histidine degradation products, histamine, urocanic acid and imidazole do not bind. L-Arg, homo-L-Arg, and post-translationally modified methylated Arg-analogs also bind with the exception of symmetric dimethylated-L-Arg. L-Lys and L-Orn show weaker interactions with HisJ and methylated and acetylated Lys variants show poor binding.The carboxylate groups of these amino acids and their variants are essential from Escherichia coli (strain K12)
hisJ / GB|AAC75369.1 histidine ABC transporter, periplasmic histidine-binding protein HisJ from Escherichia coli (see 7 papers)
    55% identity, 90% coverage of query (273 bits)

1hslA / P0AEU0 Refined 1.89 angstroms structure of the histidine-binding protein complexed with histidine and its relationship with many other active transport(slash)chemosensory receptors (see paper)
    54% identity, 89% coverage of query (269 bits)

HISJ_SALTY / P02910 Histidine-binding periplasmic protein; HBP from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see 4 papers)
hisJ / GB|AAV76512.1 histidine ABC transporter, periplasmic histidine-binding protein HisJ from Salmonella enterica subsp. enterica serovar Typhimurium (see 5 papers)
    54% identity, 89% coverage of query (268 bits)

Pf1N1B4_3431 ABC transporter for L-Arginine and L-Citrulline, periplasmic substrate-binding component from Pseudomonas fluorescens FW300-N1B4
    47% identity, 98% coverage of query (248 bits)

Pf6N2E2_5660 L-Arginine ABC transporter, periplasmic substrate-binding component from Pseudomonas fluorescens FW300-N2E2
    46% identity, 98% coverage of query (244 bits)

AO356_18700 L-Arginine ABC transporter, periplasmic substrate-binding component from Pseudomonas fluorescens FW300-N2C3
    46% identity, 98% coverage of query (243 bits)

AO353_03055 ABC transporter for L-Arginine and L-Citrulline, periplasmic substrate-binding component from Pseudomonas fluorescens FW300-N2E3
    45% identity, 98% coverage of query (241 bits)

PS417_21745 ABC transporter for L-Arginine, substrate-binding component from Pseudomonas simiae WCS417
    46% identity, 98% coverage of query (235 bits)

ARGBP_PSEAE / G3XD47 L-arginine-binding protein from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see 3 papers)
TC 3.A.1.3.11 / O50181 AotJ aka PA0888, component of Arginine/ornithine (but not lysine) porter from Pseudomonas aeruginosa (see 2 papers)
    47% identity, 90% coverage of query (233 bits)

SMc00140 L-lysine ABC transporter, substrate-binding component from Sinorhizobium meliloti 1021
    42% identity, 100% coverage of query (196 bits)

AO356_09900 ABC transporter for L-Lysine, periplasmic substrate-binding component from Pseudomonas fluorescens FW300-N2C3
    38% identity, 99% coverage of query (179 bits)

ArtJ / b0860 L-arginine ABC transporter periplasmic binding protein (EC 7.4.2.1) from Escherichia coli K-12 substr. MG1655 (see paper)
ArtJ / P30860 L-arginine ABC transporter periplasmic binding protein (EC 7.4.2.1) from Escherichia coli (strain K12) (see paper)
ARTJ_ECOLI / P30860 ABC transporter arginine-binding protein 1 from Escherichia coli (strain K12) (see paper)
TC 3.A.1.3.3 / P30860 ArtJ aka B0860, component of Arginine porter from Escherichia coli (see 7 papers)
artJ / GB|BAA35574.1 arginine ABC transporter, periplasmic arginine-binding protein ArtJ from Escherichia coli K12 (see 8 papers)
    38% identity, 97% coverage of query (169 bits)

TC 3.A.1.3.23 / Q9HU31 Amino acid (Lysine/arginine/ornithine/histidine/octopine) ABC transporter periplasmic binding protein, component of Amino acid transporter, PA5152-PA5155. Probably transports numerous amino acids including lysine, arginine, histidine, D-alanine and D-valine (Johnson et al. 2008). Regulated by ArgR from Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
    40% identity, 89% coverage of query (163 bits)

HP15_3031 L-arginine ABC transporter, periplasmic substrate-binding component ArtJ/HisJ/ArtI/AotJ/ArgT from Marinobacter adhaerens HP15
    37% identity, 99% coverage of query (158 bits)

4zv1A An ancestral arginine-binding protein bound to arginine (see paper)
    39% identity, 87% coverage of query (158 bits)

PP_3593 L-lysine and D-lysine ABC transporter, substrate-binding component from Pseudomonas putida KT2440
    35% identity, 90% coverage of query (157 bits)

4zv2A An ancestral arginine-binding protein bound to glutamine
    39% identity, 87% coverage of query (154 bits)

ArtI / b0863 putative ABC transporter periplasmic binding protein ArtI from Escherichia coli K-12 substr. MG1655 (see 3 papers)
ARTI_ECOLI / P30859 Putative ABC transporter arginine-binding protein 2 from Escherichia coli (strain K12) (see paper)
TC 3.A.1.3.3 / P30859 ArtI aka B0863, component of Arginine porter from Escherichia coli (see 7 papers)
    34% identity, 97% coverage of query (153 bits)

TC 3.A.1.3.6 / P35120 NocT aka ATU6027 aka AGR_PTI_67, component of Nopaline porter from Agrobacterium tumefaciens (see 3 papers)
    34% identity, 98% coverage of query (151 bits)

5ovzA / P35120 High resolution structure of the pbp noct in complex with nopaline (see paper)
    33% identity, 90% coverage of query (146 bits)

5itoA Structure of the periplasmic binding protein m117n-noct from a. Tumefaciens in complex with octopine
    33% identity, 90% coverage of query (146 bits)

5otcA Structure of the periplasmic binding protein (pbp) noct from agrobacterium tumefaciens c58 in complex with noroctopinic acid.
    33% identity, 89% coverage of query (144 bits)

5otaA Structure of the periplasmic binding protein (pbp) noct from agrobacterium tumefaciens c58 in complex with octopinic acid
    33% identity, 89% coverage of query (144 bits)

5ot9A Structure of the periplasmic binding protein (pbp) noct from a.Tumefaciens c58 in complex with histopine.
    33% identity, 89% coverage of query (144 bits)

4powA Structure of the pbp noct in complex with pyronopaline
    33% identity, 89% coverage of query (144 bits)

2y7iA / Q8ZKA9 Structural basis for high arginine specificity in salmonella typhimurium periplasmic binding protein stm4351. (see paper)
    33% identity, 87% coverage of query (137 bits)

BPHYT_RS24000 L-histidine ABC transporter, substrate-binding component from Burkholderia phytofirmans PsJN
    34% identity, 90% coverage of query (135 bits)

TcyJ / b1920 cystine ABC transporter periplasmic binding protein (EC 7.4.2.12) from Escherichia coli K-12 substr. MG1655 (see 12 papers)
tcyJ / P0AEM9 cystine ABC transporter periplasmic binding protein (EC 7.4.2.12) from Escherichia coli (strain K12) (see 13 papers)
TCYJ_ECOLI / P0AEM9 L-cystine-binding protein TcyJ; CBP; Protein FliY; Sulfate starvation-induced protein 7; SSI7 from Escherichia coli (strain K12) (see 6 papers)
TC 3.A.1.3.10 / P0AEM9 Cystine-binding periplasmic protein FLIY aka CysX aka B1920, component of Cystine/cysteine/diaminopimelate transporter, CysXYZ; these proteins are also designated FliY/YecS/YecC from Escherichia coli (see 7 papers)
    32% identity, 98% coverage of query (126 bits)

TC 3.A.1.3.5 / P0A4F8 Octopine-binding periplasmic protein OccT aka OccJ, component of Octopine porter from Agrobacterium tumefaciens (see 2 papers)
    35% identity, 98% coverage of query (126 bits)

6svfA / Q9WZ62 Crystal structure of the p235gk mutant of argbp from t. Maritima (see paper)
    36% identity, 86% coverage of query (125 bits)

8hqrA / Q4FLC2 Crystal structure of the arginine-/lysine-binding protein sar11_1210 from 'candidatus pelagibacter ubique' htcc1062 bound to arginine
    33% identity, 88% coverage of query (125 bits)

5orgA / P0A4F8 Structure of the periplasmic binding protein (pbp) occj from a. Tumefaciens b6 in complex with octopine. (see paper)
    35% identity, 89% coverage of query (123 bits)

ARTP_BACSU / P54535 Arginine-binding extracellular protein ArtP from Bacillus subtilis (strain 168) (see paper)
    36% identity, 86% coverage of query (115 bits)

5t0wA Crystal structure of the ancestral amino acid-binding protein anccdt- 1, a precursor of cyclohexadienyl dehydratase
    34% identity, 87% coverage of query (115 bits)

3tqlA / Q83E49 Structure of the amino acid abc transporter, periplasmic amino acid- binding protein from coxiella burnetii. (see paper)
    31% identity, 87% coverage of query (113 bits)

3i6vA / Q5LTV6 Crystal structure of a periplasmic his/glu/gln/arg/opine family- binding protein from silicibacter pomeroyi in complex with lysine
    30% identity, 88% coverage of query (111 bits)

3vvdA / Q72JG5 Crystal structure of ttc0807 complexed with ornithine (see paper)
    32% identity, 88% coverage of query (111 bits)

3vv5A Crystal structure of ttc0807 complexed with (s)-2-aminoethyl-l- cysteine (aec)
    32% identity, 88% coverage of query (111 bits)

3vvfA Crystal structure of ttc0807 complexed with arginine
    32% identity, 88% coverage of query (111 bits)

3vveA Crystal structure of ttc0807 complexed with lysine
    32% identity, 88% coverage of query (111 bits)

GlnH / b0811 L-glutamine ABC transporter periplasmic binding protein (EC 7.4.2.1) from Escherichia coli K-12 substr. MG1655 (see 13 papers)
GlnH / P0AEQ3 L-glutamine ABC transporter periplasmic binding protein (EC 7.4.2.1) from Escherichia coli (strain K12) (see 13 papers)
GLNH_ECOLI / P0AEQ3 Glutamine-binding periplasmic protein; GlnBP from Escherichia coli (strain K12) (see paper)
TC 3.A.1.3.2 / P0AEQ3 Glutamine-binding periplasmic protein GlnH aka B0811 aka GlnBP, component of Three component ABC L-glutamine porter. The basal ATPase activity (ATP hydrolysis in the absence of substrate) is mainly caused by the docking of the closed-unliganded state of GlnH onto the transporter domain of GlnPQ. Unlike glutamine, arginine binds both GlnH domains, but does not trigger their closing. Comparison of the ATPase activity in nanodiscs with glutamine transport in proteoliposomes suggested that the stoichiometry of ATP per substrate is close to two from Escherichia coli (see 7 papers)
glnH / GB|AAN79369.1 glutamine ABC transporter, periplasmic glutamine-binding protein GlnH from Escherichia coli (see 7 papers)
    33% identity, 96% coverage of query (109 bits)

HISJ_CAMJE / Q46125 Probable histidine-binding protein; HBP; p29 from Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168) (see paper)
    31% identity, 97% coverage of query (102 bits)

Ac3H11_2555 ABC transporter for L-Histidine, periplasmic substrate-binding component 1 from Acidovorax sp. GW101-3H11
    31% identity, 91% coverage of query (100 bits)

8eyzA / P0AEQ3 Engineered glutamine binding protein bound to gln and a cobaloxime ligand (see paper)
    32% identity, 85% coverage of query (96.7 bits)

Build an alignment

Build an alignment for H281DRAFT_01522 and 54 homologs with ≥ 30% identity

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Additional hits (identity < 30%)

TC 3.A.1.3.17 / Q8YSA2 Basic amino acid uptake transporter, BgtAB (see paper)
    29% identity, 88% coverage of query (95.9 bits)

4ymxA / Q8RCC4 Crystal structure of the substrate binding protein of an amino acid abc transporter (see paper)
    31% identity, 87% coverage of query (95.9 bits)

C6XGT2 ABC-type cystine transporter (EC 7.4.2.12) from Candidatus Liberibacter asiaticus (see paper)
    29% identity, 92% coverage of query (93.6 bits)

8gtuA / C6XGT2 Crystal structure of putative amino acid binding periplasmic abc transporter protein from candidatus liberibacter asiaticus in complex with clidinium (see paper)
    29% identity, 91% coverage of query (93.6 bits)

4ohnA / A0A0H2UKY8 Crystal structure of an abc uptake transporter substrate binding protein from streptococcus pneumoniae with bound histidine
    30% identity, 89% coverage of query (93.6 bits)

TC 3.A.1.3.25 / Q9CES5 Glutamine ABC transporter permease and substrate binding protein protein, component of Glutamine transporter, GlnQP. Takes up glutamine, asparagine and glutamate which compete for each other for binding both substrate and the transmembrane protein constituent of the system (Fulyani et al. 2015). Tandem substrate binding domains (SBDs) differ in substrate specificity and affinity, allowing cells to efficiently accumulate different amino acids via a single ABC transporter. Analysis revealed the roles of individual residues in determining the substrate affinity from Lactococcus lactis subsp. lactis (strain IL1403)
    29% identity, 97% coverage of query (92.4 bits)

8gu1A Crystal structure of putative amino acid binding periplasmic abc transporter protein from candidatus liberibacter asiaticus in complex with pimozide
    29% identity, 90% coverage of query (91.7 bits)

6aalA Crystal structure of putative amino acid binding periplasmic abc transporter protein from candidatus liberibacter asiaticus in complex with arginine
    29% identity, 90% coverage of query (91.7 bits)

6a80A Crystal structure of putative amino acid binding periplasmic abc transporter protein from candidatus liberibacter asiaticus in complex with cystine
    29% identity, 90% coverage of query (91.7 bits)

AAC45332.1 high affinity cystine binding protein from Lactobacillus reuteri (see 4 papers)
    27% identity, 97% coverage of query (91.3 bits)

ARTJ_CHLTR / O84385 Probable ABC transporter arginine-binding protein ArtJ from Chlamydia trachomatis (strain D/UW-3/Cx) (see paper)
    29% identity, 85% coverage of query (87.0 bits)

5lomB / Q7D447 Crystal structure of the pbp soca from agrobacterium tumefaciens c58 in complex with dfg at 1.5 a resolution (see paper)
    29% identity, 88% coverage of query (87.0 bits)

5l9oA Crystal structure of agrobacterium tumefaciens c58 strain pbp soca in complex with glucopine
    29% identity, 88% coverage of query (87.0 bits)

5l9oB Crystal structure of agrobacterium tumefaciens c58 strain pbp soca in complex with glucopine
    29% identity, 88% coverage of query (87.0 bits)

6fxgB / Q9CES5 Crystal structure of substrate binding domain 1 (sbd1) of abc transporter glnpq in complex with asparagine
    28% identity, 87% coverage of query (86.7 bits)

8b5eA Exploring the ligand binding and conformational dynamics of receptor domain 1 of the abc transporter glnpq
    28% identity, 87% coverage of query (86.7 bits)

8b5dA Exploring the ligand binding and conformational dynamics of receptor domain 1 of the abc transporter glnpq
    29% identity, 87% coverage of query (86.3 bits)

ARTJ_CHLPN / Q9Z869 Probable ABC transporter arginine-binding protein ArtJ from Chlamydia pneumoniae (Chlamydophila pneumoniae) (see 2 papers)
    29% identity, 85% coverage of query (85.1 bits)

2q2cA Crystal structures of the arginine-, lysine-, histidine-binding protein artj from the thermophilic bacterium geobacillus stearothermophilus
    30% identity, 86% coverage of query (84.7 bits)

2q2aA / D0VWX8 Crystal structures of the arginine-, lysine-, histidine-binding protein artj from the thermophilic bacterium geobacillus stearothermophilus (see paper)
    31% identity, 87% coverage of query (84.3 bits)

2pvuA Crystal structures of the arginine-, lysine-, histidine-binding protein artj from the thermophilic bacterium geobacillus stearothermophilus
    31% identity, 87% coverage of query (84.3 bits)

3qaxB / Q9Z869 Crystal structure analysis of the cpb0502
    29% identity, 85% coverage of query (84.3 bits)

2ylnA / Q5F9M1 Crystal structure of the l-cystine solute receptor of neisseria gonorrhoeae in the closed conformation (see paper)
    30% identity, 89% coverage of query (82.4 bits)

3k4uE / Q7MAG0 Crystal structure of putative binding component of abc transporter from wolinella succinogenes dsm 1740 complexed with lysine
    28% identity, 87% coverage of query (82.4 bits)

4g4pA / Q837S0 Crystal structure of glutamine-binding protein from enterococcus faecalis at 1.5 a (see paper)
    27% identity, 86% coverage of query (81.3 bits)

4i62A / A0A0H2ZN67 1.05 angstrom crystal structure of an amino acid abc transporter substrate-binding protein abpa from streptococcus pneumoniae canada mdr_19a bound to l-arginine
    29% identity, 86% coverage of query (73.6 bits)

4h5fA Crystal structure of an amino acid abc transporter substrate-binding protein from streptococcus pneumoniae canada mdr_19a bound to l- arginine, form 1
    30% identity, 83% coverage of query (70.1 bits)

4gvoA / Q8Y4T3 Putative l-cystine abc transporter from listeria monocytogenes
    27% identity, 88% coverage of query (65.9 bits)

5eyfB / Q3XZW5 Crystal structure of solute-binding protein from enterococcus faecium with bound glutamate
    26% identity, 81% coverage of query (65.9 bits)

4zefA / Q837S0 Crystal structure of substrate binding domain 2 (sbd2) of abc transporter glnpq from enterococcus faecalis
    26% identity, 81% coverage of query (64.7 bits)

2vhaA Debp
    29% identity, 87% coverage of query (63.5 bits)

2ia4B / A0A0H2UXX1 Crystal structure of novel amino acid binding protein from shigella flexneri
    29% identity, 87% coverage of query (63.5 bits)

8ovoA / P37902,P42212 X-ray structure of the sf-iglusnfr-s72a in complex with l-aspartate
    28% identity, 87% coverage of query (61.2 bits)

4eq9A / Q8DRG2 1.4 angstrom crystal structure of abc transporter glutathione-binding protein gsht from streptococcus pneumoniae strain canada mdr_19a in complex with glutathione
    25% identity, 81% coverage of query (58.2 bits)

6detA / S3MDF0 The crystal structure of tv2483 bound to l-arginine (see paper)
    22% identity, 88% coverage of query (57.0 bits)

5kkwA / Q4FLR5 Crystal structure of sar11_1068 bound to a sulfobetaine (3-(1- methylpiperidinium-1-yl)propane-1-sulfonate)
    26% identity, 87% coverage of query (57.0 bits)

2yjpA / Q5F5B5 Crystal structure of the solute receptors for l-cysteine of neisseria gonorrhoeae (see paper)
    26% identity, 93% coverage of query (56.6 bits)

4io5A Crystal structure of the avglur1 ligand binding domain complex with alanine at 1.72 angstrom resolution
    26% identity, 87% coverage of query (55.5 bits)

4io3A Crystal structure of the avglur1 ligand binding domain complex with aspartate at 1.66 angstrom resolution
    26% identity, 87% coverage of query (55.5 bits)

4io2A Crystal structure of the avglur1 ligand binding domain complex with glutamate at 1.37 angstrom resolution
    26% identity, 87% coverage of query (55.5 bits)

4io7B / E9P5T5 Crystal structure of the avglur1 ligand binding domain complex with phenylalanine at 1.9 angstrom resolution (see paper)
    26% identity, 87% coverage of query (53.9 bits)

4io6A Crystal structure of the avglur1 ligand binding domain complex with methionine at 1.6 angstrom resolution
    26% identity, 87% coverage of query (53.5 bits)

4io4A Crystal structure of the avglur1 ligand binding domain complex with serine at 1.94 angstrom resolution
    25% identity, 87% coverage of query (51.6 bits)

6h20A Glnh bound to asn, mycobacterium tuberculosis
    25% identity, 80% coverage of query (51.2 bits)

6h1uA Glnh bound to asp, mycobacterium tuberculosis
    25% identity, 80% coverage of query (51.2 bits)

6h2tA / P96257 Glnh bound to glu, mycobacterium tuberculosis (see paper)
    25% identity, 80% coverage of query (51.2 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory