Sites on a Tree

 

Searching for up to 100 curated homologs for H281DRAFT_01644 FitnessBrowser__Burk376:H281DRAFT_01644 (96 a.a.)

Found high-coverage hits (≥70%) to 13 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

catCI / BAA75206.1 muconolactone isomerase from Frateuria sp. ANA-18 (see paper)
catC1 / BAC82533.1 muconolactone isomerase from Frateuria sp. ANA-18 (see 3 papers)
    81% identity, 100% coverage of query (168 bits)

catC / P80573 muconolactone isomerase monomer (EC 5.3.3.4) from Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) (see paper)
CATC_CUPPJ / P80573 Muconolactone Delta-isomerase; MIase; EC 5.3.3.4 from Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) (Cupriavidus necator (strain JMP 134)) (see paper)
    71% identity, 96% coverage of query (143 bits)

catC / AAC46431.1 muconolactone isomerase from Acinetobacter baylyi (see 8 papers)
    67% identity, 100% coverage of query (142 bits)

PfGW456L13_3823 Muconolactone isomerase (EC 5.3.3.4) from Pseudomonas fluorescens GW456-L13
    65% identity, 99% coverage of query (137 bits)

catC / A0F0B4 muconolactone isomerase (EC 5.3.3.4) from Pseudomonas reinekei (see paper)
    63% identity, 99% coverage of query (132 bits)

PS417_23665 Muconolactone isomerase (EC 5.3.3.4) from Pseudomonas simiae WCS417
    63% identity, 99% coverage of query (131 bits)

catC2 / BAA75212.1 muconolactone isomerase from Frateuria sp. ANA-18 (see paper)
    60% identity, 99% coverage of query (123 bits)

catC / BAE46389.1 muconolactone isomerase from Rhodococcus sp. AN-22 (see paper)
    62% identity, 95% coverage of query (122 bits)

mmlJ / Q471R4 methylmuconolactone isomerase monomer (EC 5.3.3.4) from Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) (see 2 papers)
mmlJ / CAA67959.1 methylmuconolactone isomerase from Cupriavidus necator (see paper)
    58% identity, 95% coverage of query (121 bits)

catC / P00948 muconolactone isomerase subunit (EC 5.3.3.4) from Pseudomonas putida (see 3 papers)
CATC_PSEPU / P00948 Muconolactone Delta-isomerase; MIase; EC 5.3.3.4 from Pseudomonas putida (Arthrobacter siderocapsulatus) (see paper)
    58% identity, 99% coverage of query (117 bits)

clcF / Q8G9L0 5-chloromuconolactone dehalogenase monomer from Rhodococcus opacus (see 2 papers)
    49% identity, 95% coverage of query (103 bits)

3zo7B / Q8G9L0 Crystal structure of clcfe27a with substrate (see paper)
    48% identity, 95% coverage of query (100 bits)

C5MR75 muconolactone DELTA-isomerase (EC 5.3.3.4) from Pseudomonas reinekei (see paper)
    57% identity, 95% coverage of query (97.4 bits)

Build an alignment

Build an alignment for H281DRAFT_01644 and 13 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory