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Searching for up to 100 curated homologs for H281DRAFT_04067 (77 a.a.)

Found high-coverage hits (≥70%) to 17 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

8cd1X / Q9HTN8 8cd1X (see paper)
    75% identity, 97% coverage of query (124 bits)

8rd8WD / A0A0M4T6Y7 8rd8WD (see paper)
    76% identity, 97% coverage of query (122 bits)

RpmB / b3637 50S ribosomal subunit protein L28 from Escherichia coli K-12 substr. MG1655 (see 39 papers)
rpmB / P0A7M2 50S ribosomal subunit protein L28 from Escherichia coli (strain K12) (see 35 papers)
RL28_ECOLI / P0A7M2 Large ribosomal subunit protein bL28; 50S ribosomal protein L28 from Escherichia coli (strain K12) (see 7 papers)
rpmB / RF|NP_418094 50S ribosomal protein L28 from Escherichia coli K12 (see paper)
    72% identity, 99% coverage of query (117 bits)

8a3lw / P0A7M2 8a3lw (see paper)
    72% identity, 97% coverage of query (115 bits)

8cgvw Tiamulin bound to the 50s subunit
    72% identity, 97% coverage of query (115 bits)

7uvxW 7uvxW (see paper)
    67% identity, 99% coverage of query (114 bits)

7uvyW 50S ribosomal protein L2
    67% identity, 97% coverage of query (112 bits)

7jilX / A0A1B2U1R1 7jilX (see paper)
    50% identity, 96% coverage of query (80.9 bits)

5mmiY / P82245 Structure of the large subunit of the chloroplast ribosome (see paper)
    51% identity, 84% coverage of query (71.2 bits)

RK28_SPIOL / P82245 Large ribosomal subunit protein bL28c; 50S ribosomal protein L28, chloroplastic; CL28 from Spinacia oleracea (Spinach) (see 2 papers)
    51% identity, 84% coverage of query (71.2 bits)

4v61BY 4v61BY (see paper)
    49% identity, 84% coverage of query (70.9 bits)

RK28_ARATH / O22795 Large ribosomal subunit protein bL28c; 50S ribosomal protein L28, chloroplastic; CL28 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
    48% identity, 84% coverage of query (67.4 bits)

8fmwAZ / O51325 8fmwAZ (see paper)
    38% identity, 87% coverage of query (51.2 bits)

7p7qZ / Q82ZE4 7p7qZ (see paper)
    45% identity, 70% coverage of query (47.4 bits)

RM24_NEUCR / Q7SC44 Large ribosomal subunit protein bL28m from Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (see 2 papers)
    44% identity, 77% coverage of query (46.6 bits)

6yweS structure of the mitoribosome from Neurospora crassa in the P/E tRNA bound state (see paper)
    44% identity, 77% coverage of query (46.6 bits)

5mrcS / P36525 of the yeast mitochondrial ribosome - Class A (see paper)
    33% identity, 77% coverage of query (42.0 bits)

Build an alignment

Build an alignment for H281DRAFT_04067 and 17 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory