Sites on a Tree

 

Searching for up to 100 curated homologs for HSERO_RS02850 FitnessBrowser__HerbieS:HSERO_RS02850 (651 a.a.)

Found high-coverage hits (≥70%) to 17 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

pam / GI|19744118 peptide amidase from Stenotrophomonas maltophilia (see paper)
pam / CAC93616.1 peptide amidase from Stenotrophomonas maltophilia (see paper)
    37% identity, 79% coverage of query (248 bits)

1m21A / Q8RJN5 Crystal structure analysis of the peptide amidase pam in complex with the competitive inhibitor chymostatin (see paper)
    37% identity, 74% coverage of query (245 bits)

AMI4G_ARATH / A0A1P8B760 Probable amidase At4g34880; EC 3.5.1.4 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
    33% identity, 75% coverage of query (207 bits)

YI01_SCHPO / Q9URY4 Putative amidase C869.01; EC 3.5.1.4 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
    32% identity, 71% coverage of query (182 bits)

A2965_ARTBC / D4B3C8 Putative amidase ARB_02965; EC 3.5.1.- from Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) (Trichophyton mentagrophytes) (see 2 papers)
    30% identity, 72% coverage of query (161 bits)

3h0lA / O66610 Structure of tRNA-dependent amidotransferase gatcab from aquifex aeolicus (see paper)
    30% identity, 72% coverage of query (158 bits)

3h0mA Structure of tRNA-dependent amidotransferase gatcab from aquifex aeolicus
    30% identity, 72% coverage of query (158 bits)

GATA_ARATH / Q9LI77 Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial; Glu-AdT subunit A; EC 6.3.5.7 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
    31% identity, 70% coverage of query (157 bits)

6te4A / Q9HWL8 Structural insights into pseudomonas aeruginosa type six secretion system exported effector 8: tse8 in complex with a peptide (see paper)
    31% identity, 74% coverage of query (148 bits)

Build an alignment

Build an alignment for HSERO_RS02850 and 9 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

MANHY_PSEPU / Q84DC4 Mandelamide hydrolase; EC 3.5.1.86 from Pseudomonas putida (Arthrobacter siderocapsulatus) (see 3 papers)
    29% identity, 76% coverage of query (144 bits)

CNBH_COMTE / Q38M35 2-amino-5-chloromuconic acid deaminase; 2-aminomuconate deaminase; EC 3.5.99.5 from Comamonas testosteroni (Pseudomonas testosteroni) (see paper)
    30% identity, 71% coverage of query (139 bits)

Q9CZN8 glutaminyl-tRNA synthase (glutamine-hydrolysing) (EC 6.3.5.7) from Mus musculus (see paper)
    28% identity, 72% coverage of query (137 bits)

gatA / O06491 glutamyl-tRNAGln amidotransferase subunit A (EC 6.3.5.7) from Bacillus subtilis (strain 168) (see paper)
GATA_BACSU / O06491 Glutamyl-tRNA(Gln) amidotransferase subunit A; Glu-ADT subunit A; EC 6.3.5.7 from Bacillus subtilis (strain 168) (see 2 papers)
    31% identity, 72% coverage of query (137 bits)

GATA_HUMAN / Q9H0R6 Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial; Glu-AdT subunit A; Glutaminyl-tRNA synthase-like protein 1; EC 6.3.5.7 from Homo sapiens (Human) (see 3 papers)
Q9H0R6 glutaminyl-tRNA synthase (glutamine-hydrolysing) (EC 6.3.5.7) from Homo sapiens (see paper)
    27% identity, 72% coverage of query (134 bits)

DUR1,2 / P32528 urea amidolyase (EC 6.3.4.6) from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (see 6 papers)
DUR1_YEAST / P32528 Urea amidolyase; EC 6.3.4.6; EC 3.5.1.54 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see paper)
P32528 allophanate hydrolase (EC 3.5.1.54); urea carboxylase (EC 6.3.4.6) from Saccharomyces cerevisiae (see 3 papers)
    28% identity, 72% coverage of query (115 bits)

DUR1.2 / AAC41643.1 urea amidolyase from Saccharomyces cerevisiae (see paper)
    28% identity, 72% coverage of query (110 bits)

3a2qA / P13398 Structure of 6-aminohexanoate cyclic dimer hydrolase complexed with substrate (see paper)
    28% identity, 72% coverage of query (93.2 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory