Searching for up to 100 curated homologs for HSERO_RS04245 FitnessBrowser__HerbieS:HSERO_RS04245 (186 a.a.)

Found high-coverage hits (≥70%) to 8 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

DCTQ_RHOCA / O07837 C4-dicarboxylate TRAP transporter small permease protein DctQ from Rhodobacter capsulatus (Rhodopseudomonas capsulata) (see 2 papers)
TC 2.A.56.1.1 / O07837 DctQ, component of Tripartite dicarboxylate:H+ symporter (substrates include: fumarate, D- and L-malate, succinate, succinamide, orotate, iticonate and mesaconate) from Rhodobacter capsulatus (Rhodopseudomonas capsulata) (see 2 papers)
    57% identity, 98% coverage of query (228 bits)

DCTQ_PSEAE / Q9HU17 C4-dicarboxylate TRAP transporter small permease protein DctQ from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
    30% identity, 81% coverage of query (62.0 bits)

PGA1_c20670 TRAP transporter for fumarate, succinate, L-malate, and 2-oxogulatarate, small permease component from Phaeobacter inhibens BS107
    31% identity, 74% coverage of query (59.3 bits)

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Build an alignment for HSERO_RS04245 and 3 homologs with ≥ 30% identity

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Additional hits (identity < 30%)

Shew_1445 dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), small permease component from Shewanella loihica PV-4
    23% identity, 84% coverage of query (56.6 bits)

Psest_4269 C4-dicarboxylate transporter, DctQ subunit from Pseudomonas stutzeri RCH2
    29% identity, 83% coverage of query (55.8 bits)

Sama_2210 alpha-ketoglutarate TRAP transporter, small permease component from Shewanella amazonensis SB2B
    22% identity, 99% coverage of query (52.4 bits)

SIAT1_HAEIN / P44543 Sialic acid TRAP transporter permease protein SiaT; N-acetylneuraminic acid permease; N-acetylneuraminic acid transporter; Neu5Ac permease from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (see paper)
TC 2.A.56.1.3 / P44543 SiaT aka Sialic acid TRAP transporter permease protein, component of Na+-dependent (smf-driven) sialic acid (N-acetyl neuraminic acid) transporter, SiaTP (Allen et al., 2005; Severi et al., 2005; Johnston et al., 2008). SiaT is also called SiaQM from Haemophilus influenzae (see 2 papers)
    30% identity, 89% coverage of query (47.4 bits)

SIAT2_HAEIF / Q4TVS0 Sialic acid TRAP transporter permease protein SiaT; N-acetylneuraminic acid permease; N-acetylneuraminic acid transporter; Neu5Ac permease from Haemophilus influenzae (see paper)
    29% identity, 89% coverage of query (44.7 bits)

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