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Searching for up to 100 curated homologs for HSERO_RS04905 FitnessBrowser__HerbieS:HSERO_RS04905 (550 a.a.)

Found high-coverage hits (≥70%) to 9 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

3u33A / P33224 Crystal structure of the e. Coli adaptive response protein aidb in the space group p3(2) (see paper)
    51% identity, 95% coverage of query (480 bits)

AidB / b4187 putative acyl-CoA dehydrogenase AidB (EC 1.3.8.4) from Escherichia coli K-12 substr. MG1655 (see 6 papers)
AidB / P33224 isovaleryl-CoA dehydrogenase and DNA-binding transcriptional repressor (EC 1.3.8.4) from Escherichia coli (strain K12) (see 13 papers)
AIDB_ECOLI / P33224 Putative acyl-CoA dehydrogenase AidB; EC 1.3.99.- from Escherichia coli (strain K12) (see 4 papers)
    51% identity, 95% coverage of query (479 bits)

5ez3B / Q8YC61 Crystal structure acyl-coa dehydrogenase from brucella melitensis in complex with fad
    46% identity, 96% coverage of query (438 bits)

6sd8X / Q6MJ59 Bd2924 apo-form (see paper)
    30% identity, 87% coverage of query (170 bits)

6sdaB Bd2924 c10 acyl-coenzymea bound form
    30% identity, 87% coverage of query (170 bits)

Build an alignment

Build an alignment for HSERO_RS04905 and 5 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

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Change minimum %identity:

Additional hits (identity < 30%)

4y9jB / Q9XWZ2 Crystal structure of caenorhabditis elegans acdh-11 in complex with c11-coa (see paper)
    29% identity, 71% coverage of query (155 bits)

ACD11_CAEEL / Q9XWZ2 Acyl-CoA dehydrogenase family member 11; EC 1.3.99.- from Caenorhabditis elegans (see paper)
    29% identity, 71% coverage of query (155 bits)

ACDS_CLOAB / P52042 Acyl-CoA dehydrogenase, short-chain specific; Butyryl-CoA dehydrogenase; SCAD; EC 1.3.8.1 from Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) (see paper)
bcd butyryl-CoA dehydrogenase; EC 1.3.99.2 from Clostridium acetobutylicum (see paper)
    23% identity, 70% coverage of query (91.7 bits)

3nf4A / G7CDN2 Crystal structure of acyl-coa dehydrogenase from mycobacterium thermoresistibile bound to flavin adenine dinucleotide (see paper)
    23% identity, 71% coverage of query (62.4 bits)

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory