Searching for up to 100 curated homologs for HSERO_RS07420 FitnessBrowser__HerbieS:HSERO_RS07420 (158 a.a.)
Found high-coverage hits (≥70%) to 49 curated proteins.
You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.
fdsG / GI|3724143 NAD-dependent formate dehydrogenase, gamma subunit from Ralstonia eutropha H16 (see paper)
64% identity, 96% coverage of query (209 bits)
6vw8C / Q0KDY3 Formate dehydrogenase fdsabg subcomplex fdsbg from c. Necator (see paper)
65% identity, 96% coverage of query (208 bits)
Q84FW3 formate dehydrogenase (EC 1.17.1.9) from Methylorubrum extorquens (see paper)
50% identity, 99% coverage of query (151 bits)
6tg9G / D5AQH2 Cryo-em structure of nadh reduced form of NAD+-dependent formate dehydrogenase from rhodobacter capsulatus (see paper)
50% identity, 87% coverage of query (135 bits)
7t2rC / I4BYB8 Structure of electron bifurcating ni-fe hydrogenase complex hydabcsl in fmn-free apo state (see paper)
40% identity, 91% coverage of query (127 bits)
8a5eC / H6LFG7 Cryo-em structure of the electron bifurcating fe-fe hydrogenase hydabc complex from acetobacterium woodii in the reduced state (see paper)
32% identity, 94% coverage of query (108 bits)
K0B468 formate dehydrogenase (NAD+, ferredoxin) (subunit 1/4) (EC 1.17.1.11) from Gottschalkia acidurici (see paper)
31% identity, 94% coverage of query (104 bits)
TC 3.D.1.5.1 / Q74GA4 NuoE aka GSU0342, component of Proton-translocating NADH dehydrogenase I from Geobacter sulfurreducens (see paper)
30% identity, 92% coverage of query (100 bits)
8oh5A / A0A0U1KYW8 Cryo-em structure of the electron bifurcating transhydrogenase stnabc complex from sporomusa ovata (state 2) (see paper)
32% identity, 93% coverage of query (99.4 bits)
B2BSJ7 NAD(P)H sulfur oxidoreductase (CoA-dependent) (subunit 4/4) (EC 1.8.1.18) from Thermococcus litoralis (see paper)
31% identity, 85% coverage of query (96.3 bits)
Build an alignment for HSERO_RS07420 and 10 homologs with ≥ 30% identity
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8a6tC / A0A097ATI0 Cryo-em structure of the electron bifurcating fe-fe hydrogenase hydabc complex from thermoanaerobacter kivui in the reduced state (see paper)
29% identity, 88% coverage of query (94.0 bits)
nuoE / Q88FH4 NADH-quinone oxidoreductasesubunit E (EC 7.1.1.2) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) (see 2 papers)
35% identity, 82% coverage of query (92.0 bits)
8b9zE / Q9VX36 Drosophila melanogaster complex i in the active state (dm1) (see paper)
31% identity, 82% coverage of query (89.7 bits)
8eswV2 NADH dehydrogenase (Ubiquinone) 24 kDa subunit, isoform A
31% identity, 82% coverage of query (89.7 bits)
Q9Z354 hydrogen dehydrogenase (EC 1.12.1.2) from Synechocystis sp. (see paper)
34% identity, 83% coverage of query (88.2 bits)
HNDA_SOLFR / Q46505 NADP-reducing hydrogenase subunit HndA; Hydrogen dehydrogenase (NADP(+)); EC 1.12.1.3 from Solidesulfovibrio fructosivorans (Desulfovibrio fructosivorans) (see 3 papers)
28% identity, 87% coverage of query (87.8 bits)
7awtE / P0AFD1 E. Coli nadh quinone oxidoreductase hydrophilic arm (see paper)
32% identity, 82% coverage of query (85.5 bits)
NuoE / b2285 NADH:quinone oxidoreductase subunit E from Escherichia coli K-12 substr. MG1655 (see 15 papers)
nuoE / P0AFD1 NADH:quinone oxidoreductase subunit E from Escherichia coli (strain K12) (see 17 papers)
TC 3.D.1.1.1 / P0AFD1 NUOE aka B2285, component of NADH dehydrogenase I, NuoA-N from Escherichia coli (see 6 papers)
nuoE / RF|NP_416788 NDH-1 subunit E; EC 1.6.99.5 from Escherichia coli K12 (see 9 papers)
32% identity, 82% coverage of query (85.5 bits)
hydC / O52681 hydrogenase γ subunit (EC 1.12.1.4) from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) (see 2 papers)
HYDC_THEMA / O52681 Bifurcating [FeFe] hydrogenase gamma subunit; Hydrogenase (NAD(+), ferredoxin) gamma subunit; Iron-hydrogenase gamma subunit; EC 1.12.1.4 from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) (see 3 papers)
29% identity, 84% coverage of query (84.7 bits)
7p5hC / O52681 Tmhydabc- d2 map (see paper)
29% identity, 84% coverage of query (84.3 bits)
8e9gE / A0QU32 Mycobacterial respiratory complex i with both quinone positions modelled (see paper)
31% identity, 91% coverage of query (83.6 bits)
5gupE / F1SM98 structure of mammalian respiratory supercomplex I1III2IV1 (see paper)
31% identity, 82% coverage of query (83.2 bits)
NDUFV2 / P19404 NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial from Homo sapiens (see 4 papers)
NDUV2_HUMAN / P19404 NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial; NDUFV2; NADH-ubiquinone oxidoreductase 24 kDa subunit; EC 7.1.1.2 from Homo sapiens (Human) (see 4 papers)
32% identity, 82% coverage of query (82.8 bits)
Q6XQK5 hydrogen dehydrogenase (EC 1.12.1.2) from Thiocapsa roseopersicina (see paper)
29% identity, 82% coverage of query (82.8 bits)
NQO2_THET8 / Q56221 NADH-quinone oxidoreductase subunit 2; NADH dehydrogenase I chain 2; NDH-1 subunit 2; EC 7.1.1.- from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) (see 2 papers)
TC 3.D.1.3.1 / Q56221 Nqo2, component of NADH Dehydrogenase, NDH (Baradaran et al. 2013). The x-ray structures of various complexes have been solved, and a coupling mechanism involving long range conformational changes has been proposed from Thermus thermophilus (see 3 papers)
33% identity, 72% coverage of query (82.4 bits)
3iam2 / Q56221 Crystal structure of the hydrophilic domain of respiratory complex i from thermus thermophilus, reduced, 2 mol/asu, with bound nadh (see paper)
33% identity, 72% coverage of query (82.4 bits)
3i9v2 Crystal structure of the hydrophilic domain of respiratory complex i from thermus thermophilus, oxidized, 2 mol/asu
33% identity, 72% coverage of query (82.4 bits)
7dgq9 NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
31% identity, 82% coverage of query (82.0 bits)
NDUV2_BOVIN / P04394 NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial; NADH dehydrogenase subunit II; NADH-ubiquinone oxidoreductase 24 kDa subunit; EC 7.1.1.2 from Bos taurus (Bovine) (see 4 papers)
TC 3.D.1.6.1 / P04394 24 (NuoE), component of The vertebrate H+-translocating NADH dehydrogenase (NDH) complex (45 subunits) from Bos taurus (Bovine) (see 3 papers)
31% identity, 82% coverage of query (81.3 bits)
7v2cO / A0A287BG40 Active state complex i from q10 dataset (see paper)
31% identity, 82% coverage of query (81.3 bits)
NDUV2_MOUSE / Q9D6J6 NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial; NADH-ubiquinone oxidoreductase 24 kDa subunit; EC 7.1.1.2 from Mus musculus (Mouse) (see paper)
31% identity, 82% coverage of query (80.9 bits)
6r7pA / O66842 Crystal structure of oxidized aquifex aeolicus nadh-quinone oxidoreductase subunits nuoe and nuof s96m (see paper)
33% identity, 82% coverage of query (80.5 bits)
8b6fAI / I7MEP0 8b6fAI (see paper)
34% identity, 76% coverage of query (80.1 bits)
P9WIV5 NADH-quinone oxidoreductase subunit E; NADH dehydrogenase I subunit E; NDH-1 subunit E; EC 7.1.1.- from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
29% identity, 91% coverage of query (80.1 bits)
7b0nE / Q9UUT9 3.7-angstrom structure of Yarrowia lipolytica complex I with an R121M mutation in NUCM. (see paper)
28% identity, 82% coverage of query (78.2 bits)
hytC / S5ZJ59 hydrogenase (NADP+,ferredoxin) γ subunit from Clostridium autoethanogenum DSM 10061 (see paper)
25% identity, 99% coverage of query (77.8 bits)
orf19.2091 potential mitochondrial complex I, NUHM_24kd subunit from Candida albicans (see paper)
27% identity, 85% coverage of query (73.9 bits)
nuoE / CAA71230.1 complex I 24kDa subunit from Rhodobacter capsulatus (see paper)
34% identity, 85% coverage of query (72.0 bits)
7zmbH / G0SDM6 Cryoem structure of mitochondrial complex i from chaetomium thermophilum (state 2) (see paper)
28% identity, 85% coverage of query (67.0 bits)
hoxF / P22317 α subunit from Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337) (see paper)
P22317 hydrogen dehydrogenase (EC 1.12.1.2) from Cupriavidus necator (see paper)
26% identity, 84% coverage of query (65.9 bits)
TC 3.D.1.6.2 / P40915 24 (NuoE), component of The fungal H+ translocating NADH dehydrogenase (NDH) complex (38 subunits; 35 included here) from Neurospora crassa (see 3 papers)
28% identity, 85% coverage of query (65.9 bits)
TC 3.D.1.6.4 / Q6V9B3 27 (NuoE), component of The green algal H+ translocating NADH dehydrogenase (NDH) complex (42 subunits; 33 included here) from Chlamydomonas reinhardtii (see paper)
31% identity, 72% coverage of query (65.9 bits)
7arcE Cryo-em structure of polytomella complex-i (peripheral arm) (see paper)
32% identity, 73% coverage of query (63.2 bits)
TC 3.D.1.2.1 / P29914 NQO2, component of NADH dehydrogenase I from Paracoccus denitrificans (see 2 papers)
NQO2 / AAA25588.1 NADH dehydrogenase from Paracoccus denitrificans (see paper)
29% identity, 81% coverage of query (63.2 bits)
P29914 NADH-quinone oxidoreductase chain 2; NADH dehydrogenase I, chain 2; NDH-1, chain 2; EC 7.1.1.- from Paracoccus denitrificans
29% identity, 81% coverage of query (63.2 bits)
8e73V2 / A0A0L9UNZ4 8e73V2 (see paper)
28% identity, 72% coverage of query (58.2 bits)
at4g02580 / O22769 NADH-ubiquinone oxidoreductase 24 kDa subunit (EC 7.1.1.2) from Arabidopsis thaliana (see paper)
TC 3.D.1.6.3 / O22769 28.3 (NuoE), component of The higher plant H+ translocating NADH dehydrogenase (NDH) complex (41 subunits; 23 included here) from Arabidopsis thaliana (Mouse-ear cress) (see 3 papers)
27% identity, 72% coverage of query (57.0 bits)
7a23B / O22769 Plant mitochondrial respiratory complex i (see paper)
27% identity, 72% coverage of query (56.2 bits)
K0AXR5 formate dehydrogenase (NAD+, ferredoxin) (subunit 3/4) (EC 1.17.1.11) from Gottschalkia acidurici (see paper)
23% identity, 81% coverage of query (53.1 bits)
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Lawrence Berkeley National Laboratory