Sites on a Tree

 

Searching for up to 100 curated homologs for HSERO_RS14245 FitnessBrowser__HerbieS:HSERO_RS14245 (250 a.a.)

Found high-coverage hits (≥70%) to 16 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

Q72FN2 ABC-type molybdate transporter (EC 7.3.2.5); ABC-type tungstate transporter (EC 7.3.2.6) from Desulfovibrio vulgaris (see paper)
    38% identity, 85% coverage of query (121 bits)

TC 3.A.1.6.3 / P71745 CysT aka RV2399C aka MTCY253.22 aka MT2470, component of Sulfate porter from Mycobacterium tuberculosis (see 3 papers)
    35% identity, 89% coverage of query (108 bits)

TC 3.A.1.8.2 / Q8TJ86 Molybdenum ABC transporter, permease protein, component of The molybdate/tungstate ABC transporter, ModABC. The trans-inhibited 3-d structure of ModABC, is available (3D31.A and 3D31.B)(Gerber et al., 2008) from Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
    34% identity, 83% coverage of query (107 bits)

CYST_ANTAG / Q85AI0 Probable sulfate transport system permease protein cysT from Anthoceros angustus (Hornwort) (Anthoceros formosae) (see 2 papers)
    33% identity, 84% coverage of query (97.1 bits)

TC 3.A.1.6.3 / P71746 CysW aka RV2398C aka MT2469 aka MTCY253.23, component of Sulfate porter from Mycobacterium tuberculosis (see 2 papers)
    30% identity, 84% coverage of query (95.1 bits)

CysU / b2424 sulfate/thiosulfate ABC transporter inner membrane subunit CysU (EC 7.3.2.3; EC 7.3.2.5) from Escherichia coli K-12 substr. MG1655 (see paper)
CysU / P16701 sulfate/thiosulfate ABC transporter inner membrane subunit CysU (EC 7.3.2.3; EC 7.3.2.5) from Escherichia coli (strain K12) (see paper)
CYST_ECOLI / P16701 Sulfate transport system permease protein CysT from Escherichia coli (strain K12) (see paper)
TC 3.A.1.6.1 / P16701 CysT aka CysU aka B2424, component of Sulfate/thiosulfate porter from Escherichia coli (see 6 papers)
    32% identity, 78% coverage of query (93.6 bits)

modB / AAB60172.1 ModB from Escherichia coli (see 2 papers)
    35% identity, 90% coverage of query (93.2 bits)

ModB / b0764 molybdate ABC transporter membrane subunit (EC 7.3.2.5) from Escherichia coli K-12 substr. MG1655 (see 2 papers)
ModB / P0AF01 molybdate ABC transporter membrane subunit (EC 7.3.2.5) from Escherichia coli (strain K12) (see 2 papers)
TC 3.A.1.8.1 / P0AF01 Molybdenum transport system permease protein ModB aka CHLJ aka B0764, component of Molybdate porter consisting of three proteins from Escherichia coli (see 7 papers)
modB / ECOCYC|MODB-MONOMER molybdenum transport system permease protein modB from Escherichia coli K12 (see 8 papers)
    35% identity, 90% coverage of query (92.8 bits)

MOBDP_HALVD / D4GQ17 Probable molybdenum ABC transporter permease protein HVO_B0370 from Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) (Halobacterium volcanii) (see paper)
    41% identity, 74% coverage of query (87.8 bits)

Build an alignment

Build an alignment for HSERO_RS14245 and 9 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

SULP1_CHLRE / Q8RVC7 Sulfate permease 1, chloroplastic from Chlamydomonas reinhardtii (Chlamydomonas smithii) (see 4 papers)
TC 3.A.1.6.7 / Q8RVC7 Chloroplast sulfate permease, component of The chloroplast sulfate transporter, SulP/SulP2/Sabc/Sbp from Chlamydomonas reinhardtii (see 2 papers)
    29% identity, 86% coverage of query (85.1 bits)

SULP2_CHLRE / Q6QJE2 Sulfate permease 2, chloroplastic from Chlamydomonas reinhardtii (Chlamydomonas smithii) (see 2 papers)
TC 3.A.1.6.7 / Q6QJE2 Chloroplast sulfate permease, component of The chloroplast sulfate transporter, SulP/SulP2/Sabc/Sbp from Chlamydomonas reinhardtii (see paper)
    31% identity, 74% coverage of query (78.6 bits)

TC 3.A.1.6.5 / Q8U4K4 WtpB, component of Tungsten (KM=20pM)/molybdate (KM=10nM) porter from Pyrococcus furiosus (see paper)
    30% identity, 72% coverage of query (77.0 bits)

CysW / b2423 sulfate/thiosulfate ABC transporter inner membrane subunit CysW (EC 7.3.2.3; EC 7.3.2.5) from Escherichia coli K-12 substr. MG1655 (see paper)
CysW / P0AEB0 sulfate/thiosulfate ABC transporter inner membrane subunit CysW (EC 7.3.2.3; EC 7.3.2.5) from Escherichia coli (strain K12) (see paper)
TC 3.A.1.6.1 / P0AEB0 Sulfate transport system permease protein CysW aka B2423, component of Sulfate/thiosulfate porter from Escherichia coli (see 5 papers)
    29% identity, 93% coverage of query (76.6 bits)

TC 3.A.1.6.4 / Q3M5U2 Binding-protein-dependent transport systems inner membrane component aka VupB, component of Vanadate porter (Pratte and Thiel, 2006) (most similar to TupABC (3.A.1.6.2)) from Anabaena variabilis (strain ATCC 29413 / PCC 7937)
    26% identity, 84% coverage of query (55.5 bits)

TC 3.A.1.11.3 / Q44382 MotC, component of Mannopine porter from Agrobacterium tumefaciens (see paper)
    27% identity, 81% coverage of query (54.3 bits)

TC 3.A.1.11.4 / O70110 ChtI aka ChtJ, component of Chrysopine porter (see paper)
    27% identity, 73% coverage of query (52.8 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory