Sites on a Tree

 

Searching for up to 100 curated homologs for HSERO_RS14410 FitnessBrowser__HerbieS:HSERO_RS14410 (128 a.a.)

Found high-coverage hits (≥70%) to 2 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

VIR17_SALTY / Q8ZM36 Virulence protein STM3117 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see 2 papers)
Q8ZM36 lactoylglutathione lyase (EC 4.4.1.5) from Salmonella enterica subsp. enterica serovar Typhimurium (see paper)
    54% identity, 98% coverage of query (139 bits)

RDO1 / A0A0U2WCB2 2-hydroxyparaconate dioxygenase from Ustilago maydis (see paper)
RDO1_USTMD / A0A0U2WCB2 Glyoxalase domain-containing protein RDO1; Itaconic acid/2-hydroxyparaconate biosynthesis cluster protein RDO1; Putative ring-cleaving dioxygenase 1 from Ustilago maydis (Corn smut fungus) (see 2 papers)
    54% identity, 95% coverage of query (129 bits)

Build an alignment

Build an alignment for HSERO_RS14410 and 2 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory