Sites on a Tree

 

Searching for up to 100 curated homologs for HSERO_RS20620 FitnessBrowser__HerbieS:HSERO_RS20620 (250 a.a.)

Found high-coverage hits (≥70%) to 4 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

paaC / Q845J4 ring 1,2-phenylacetyl-CoA epoxidase PaaC subunit (EC 1.14.13.149) from Pseudomonas sp. Y2 (see paper)
    56% identity, 98% coverage of query (277 bits)

YdbP / b1390 phenylacetyl-CoA 1,2-epoxidase, structural subunit (EC 1.14.13.149) from Escherichia coli K-12 substr. MG1655 (see 3 papers)
paaC / P76079 phenylacetyl-CoA 1,2-epoxidase, structural subunit (EC 1.14.13.149) from Escherichia coli (strain K12) (see 2 papers)
PAAC_ECOLI / P76079 1,2-phenylacetyl-CoA epoxidase, subunit C; 1,2-phenylacetyl-CoA epoxidase, structural subunit beta; 1,2-phenylacetyl-CoA monooxygenase, subunit C from Escherichia coli (strain K12) (see 6 papers)
P76079 phenylacetyl-CoA 1,2-epoxidase (EC 1.14.13.149) from Escherichia coli (see paper)
    54% identity, 100% coverage of query (261 bits)

antJ / A3KI26 anthraniloyl-[acp] 1,2-epoxidase subunit J from Streptomyces ambofaciens (strain ATCC 23877 / 3486 / DSM 40053 / JCM 4204 / NBRC 12836 / NRRL B-2516) (see 2 papers)
    42% identity, 96% coverage of query (202 bits)

Build an alignment

Build an alignment for HSERO_RS20620 and 3 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

antH / A3KI28 anthraniloyl-[acp] 1,2-epoxidase subunit H from Streptomyces ambofaciens (strain ATCC 23877 / 3486 / DSM 40053 / JCM 4204 / NBRC 12836 / NRRL B-2516) (see 2 papers)
    27% identity, 72% coverage of query (45.1 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory