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Searching for up to 100 curated homologs for HSERO_RS20635 FitnessBrowser__HerbieS:HSERO_RS20635 (561 a.a.)

Found high-coverage hits (≥70%) to 11 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

H281DRAFT_05724 3-oxo-5,6-didehydrosuberyl-CoA semialdehyde dehydrogenase PaaZ (EC:1.2.1.91) from Paraburkholderia bryophila 376MFSha3.1
    61% identity, 100% coverage of query (651 bits)

BPHYT_RS17340 3-oxo-5,6-didehydrosuberyl-CoA semialdehyde dehydrogenase PaaZ (EC:1.2.1.91) from Burkholderia phytofirmans PsJN
    60% identity, 100% coverage of query (632 bits)

Build an alignment

Build an alignment for HSERO_RS20635 and 2 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

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Change minimum %identity:

Additional hits (identity < 30%)

AL9A1_GADMC / P56533 4-trimethylaminobutyraldehyde dehydrogenase; TMABA-DH; TMABADH; Aldehyde dehydrogenase family 9 member A1; Betaine aldehyde dehydrogenase; BADH; EC 1.2.1.47; EC 1.2.1.3 from Gadus morhua subsp. callarias (Baltic cod) (Gadus callarias) (see paper)
1bpwA / P56533 Betaine aldehyde dehydrogenase from cod liver (see paper)
    25% identity, 71% coverage of query (67.0 bits)

Q9K9B2 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Alkalihalobacillus halodurans (see paper)
    24% identity, 79% coverage of query (62.0 bits)

ROCA2_BACSU / P94391 1-pyrroline-5-carboxylate dehydrogenase 2; P5C dehydrogenase 2; L-glutamate gamma-semialdehyde dehydrogenase; EC 1.2.1.88 from Bacillus subtilis (strain 168) (see 3 papers)
    22% identity, 74% coverage of query (60.1 bits)

Psest_2276 Aldehyde dehydrogenase (EC 1.2.1.3) from Pseudomonas stutzeri RCH2
    25% identity, 70% coverage of query (57.0 bits)

BWI76_RS21985 acetaldehyde dehydrogenase (EC 1.2.1.3) from Klebsiella michiganensis M5al
    24% identity, 80% coverage of query (55.5 bits)

3rhdA / Q58806 Crystal structure of glyceraldehyde-3-phosphate dehydrogenase gapn from methanocaldococcus jannaschii dsm 2661 complexed with NADP
    22% identity, 76% coverage of query (51.6 bits)

6rtsA / O85725 Piperideine-6-carboxylate dehydrogenase from streptomyces clavuligerus complexed with NAD+ (see paper)
    24% identity, 75% coverage of query (50.8 bits)

6rttA Piperideine-6-carboxylate dehydrogenase from streptomyces clavuligerus complexed with picolinic acid
    24% identity, 75% coverage of query (50.8 bits)

6rtuA Piperideine-6-carboxylate dehydrogenase from streptomyces clavuligerus complexed with alpha-aminoadipic acid
    24% identity, 75% coverage of query (46.2 bits)

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory