Sites on a Tree

 

Searching for up to 100 curated homologs for HSERO_RS22200 FitnessBrowser__HerbieS:HSERO_RS22200 (459 a.a.)

Found high-coverage hits (≥70%) to 4 curated proteins.

Removed hits that are identical to the query, leaving 3

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

SMc03003 Rhamnulokinase RhaK in alpha-proteobacteria (EC 2.7.1.5) from Sinorhizobium meliloti 1021
    44% identity, 98% coverage of query (332 bits)

rhaK / Q7BSH0 rhamnulokinase (EC 2.7.1.5) from Rhizobium leguminosarum bv. trifolii (see 2 papers)
    43% identity, 97% coverage of query (304 bits)

Dshi_2429 Rhamnulokinase RhaK in alpha-proteobacteria (EC 2.7.1.5) from Dinoroseobacter shibae DFL-12
    41% identity, 97% coverage of query (290 bits)

Build an alignment

Build an alignment for HSERO_RS22200 and 3 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory