Sites on a Tree

 

Searching for up to 100 curated homologs for MMP_RS06755 (52 a.a.)

Found high-coverage hits (≥70%) to 5 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

hymB / GI|14250934 protein HymB from Eubacterium acidaminophilum (see paper)
    50% identity, 92% coverage of query (46.6 bits)

Q9P9E6 pyruvate synthase (subunit 3/5) (EC 1.2.7.1) from Methanococcus maripaludis (see paper)
    48% identity, 90% coverage of query (43.5 bits)

8zqdA / A0A1I9RYV3 Anaerobically isolated active [fefe]-hydrogenase cba5h
    45% identity, 98% coverage of query (43.1 bits)

6fahE / H6LGM8 Molecular basis of the flavin-based electron-bifurcating caffeyl-coa reductase reaction (see paper)
    44% identity, 92% coverage of query (42.4 bits)

8a6tB / A0A097ATG4 Cryo-em structure of the electron bifurcating fe-fe hydrogenase hydabc complex from thermoanaerobacter kivui in the reduced state (see paper)
    49% identity, 87% coverage of query (42.0 bits)

Build an alignment

Build an alignment for MMP_RS06755 and 5 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory