Sites on a Tree

 

Searching for up to 100 curated homologs for N515DRAFT_0592 N515DRAFT_0592 glucose/galactose transporter (430 a.a.)

Found high-coverage hits (≥70%) to 10 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

SO3503 N-acetyl glucosamine transporter, NagP from Shewanella oneidensis MR-1
TC 2.A.1.7.8 / Q8EBL0 N-acetylglucosamine porter, NagP from Shewanella oneidensis (see paper)
    41% identity, 97% coverage of query (283 bits)

Shewana3_3110 N-acetylglucosamine transporter nagP from Shewanella sp. ANA-3
    40% identity, 97% coverage of query (275 bits)

N515DRAFT_1918 fructose porter FruP from Dyella japonica UNC79MFTsu3.2
    34% identity, 100% coverage of query (199 bits)

TC 2.A.1.7.2 / P0C105 Glucose/galactose porter from Brucella abortus (see paper)
    34% identity, 93% coverage of query (189 bits)

Sama_0562 D-mannose transporter (MFS superfamily) from Shewanella amazonensis SB2B
    34% identity, 94% coverage of query (152 bits)

FucP / b2801 L-fucose:H+ symporter from Escherichia coli K-12 substr. MG1655 (see 5 papers)
fucP / P11551 L-fucose:H+ symporter from Escherichia coli (strain K12) (see 13 papers)
FUCP_ECOLI / P11551 L-fucose-proton symporter; 6-deoxy-L-galactose permease; L-fucose permease; L-fucose-H(+) symport protein from Escherichia coli (strain K12) (see 6 papers)
TC 2.A.1.7.1 / P11551 L-Fucose:H+ symporter. The x-ray structure (3.1Å resolution) from Escherichia coli (see 8 papers)
    30% identity, 88% coverage of query (145 bits)

gluP / O25788 D-glucose/D-galactose/D-mannose:Na+ symporter from Helicobacter pylori (strain ATCC 700392 / 26695) (see 2 papers)
TC 2.A.1.7.7 / O25788 The Na+-dependent sugar transporter, HP1174 (transports glucose, galactose, mannose and 2-deoxyglucose (Psakis et al. 2009)). (most similar to 2.A.1.7.2; 49% identity) from Helicobacter pylori (see paper)
    30% identity, 94% coverage of query (139 bits)

Build an alignment

Build an alignment for N515DRAFT_0592 and 7 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

BT1277 L-fucose/D-arabinose symporter FucP from Bacteroides thetaiotaomicron VPI-5482
    25% identity, 96% coverage of query (119 bits)

TC 2.A.1.7.5 / Q8XEV7 2-Deoxy-D-ribose porter, DeoP (see 2 papers)
    26% identity, 97% coverage of query (103 bits)

BT1758 fructose transporter from Bacteroides thetaiotaomicron VPI-5482
    27% identity, 95% coverage of query (74.3 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory