Sites on a Tree

 

Searching for up to 100 curated homologs for N515DRAFT_1254 FitnessBrowser__Dyella79:N515DRAFT_1254 (296 a.a.)

Found high-coverage hits (≥70%) to 8 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

BPHYT_RS34220 L-fucono-1,5-lactonase from Burkholderia phytofirmans PsJN
    49% identity, 93% coverage of query (245 bits)

FCNLN_BURCM / Q0BGE1 L-fucono-1,5-lactonase; Fuconolactonase; EC 3.1.1.120 from Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) (Burkholderia cepacia (strain AMMD)) (see paper)
    44% identity, 93% coverage of query (198 bits)

FCNLN_PSEA6 / P0DX22 L-fucono-1,5-lactonase; Fuconolactonase; EC 3.1.1.120 from Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) (see paper)
    35% identity, 93% coverage of query (177 bits)

HSERO_RS05265 L-fucono-1,5-lactonase from Herbaspirillum seropedicae SmR1
    36% identity, 93% coverage of query (144 bits)

BmulJ_04915 / A0A0H3KNC4 L-fucono-1,5-lactonase (EC 3.1.1.120) from Burkholderia multivorans (strain ATCC 17616 / 249) (see paper)
FCNLN_BURM1 / A0A0H3KNC4 L-fucono-1,5-lactonase; Fuconolactonase; EC 3.1.1.120 from Burkholderia multivorans (strain ATCC 17616 / 249) (see paper)
    36% identity, 93% coverage of query (129 bits)

4dlfA / A0A0H3KNC4 Crystal structure of an amidohydrolase (cog3618) from burkholderia multivorans (target efi-500235) with bound zn, space group p3221
    36% identity, 93% coverage of query (129 bits)

Build an alignment

Build an alignment for N515DRAFT_1254 and 6 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

SM_b21101 L-fucono-1,5-lactonase; D-arabinolactonase from Sinorhizobium meliloti 1021
    28% identity, 93% coverage of query (97.8 bits)

clxL / Q0K1W5 2-carboxy-L-lyxonolactone hydrolase from Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337) (see paper)
    27% identity, 95% coverage of query (56.2 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory