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Searching for up to 100 curated homologs for N515DRAFT_1323 FitnessBrowser__Dyella79:N515DRAFT_1323 (401 a.a.)

Found high-coverage hits (≥70%) to 7 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

Echvi_1845 predicted 3-ketohexose transporter from Echinicola vietnamensis KMM 6221, DSM 17526
    46% identity, 97% coverage of query (365 bits)

CA265_RS15375 predicted 3-ketohexose transporter from Pedobacter sp. GW460-11-11-14-LB5
    47% identity, 97% coverage of query (363 bits)

YegT / b2098 putative transporter YegT from Escherichia coli K-12 substr. MG1655 (see 4 papers)
    41% identity, 97% coverage of query (293 bits)

NupG / b2964 nucleoside:H+ symporter NupG from Escherichia coli K-12 substr. MG1655 (see 7 papers)
nupG / P0AFF4 nucleoside:H+ symporter NupG from Escherichia coli (strain K12) (see 20 papers)
NUPG_ECOLI / P0AFF4 Nucleoside permease NupG; Nucleoside-transport system protein NupG from Escherichia coli (strain K12) (see 7 papers)
TC 2.A.1.10.1 / P0AFF4 Nucleoside porter, NupG from Escherichia coli (see 4 papers)
nupG nucleoside permease nupG from Escherichia coli K12 (see 5 papers)
    32% identity, 97% coverage of query (213 bits)

XapB / b2406 xanthosine:H+ symporter XapB from Escherichia coli K-12 substr. MG1655 (see 3 papers)
xapB / P45562 xanthosine:H+ symporter XapB from Escherichia coli (strain K12) (see 4 papers)
XAPB_ECOLI / P45562 Xanthosine permease; Xanthosine transporter from Escherichia coli (strain K12) (see 3 papers)
TC 2.A.1.10.2 / P45562 Xanthosine porter, XapB from Escherichia coli (strain K12)
    33% identity, 96% coverage of query (211 bits)

CCNA_01700 predicted 3-ketohexose transporter from Caulobacter crescentus NA1000
    32% identity, 86% coverage of query (154 bits)

Build an alignment

Build an alignment for N515DRAFT_1323 and 6 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

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Change minimum %identity:

Additional hits (identity < 30%)

CSCB_ECOLX / P30000 Sucrose permease; Sucrose transport protein from Escherichia coli (see 3 papers)
TC 2.A.1.5.3 / P30000 Sucrose:H+ symporter, CscB, also transports maltose (Peng et al. 2009). CscB recognizes not just sucrose but also fructose and lactulose, but glucopyranosides are not transported and do not inhibit sucrose transport from Escherichia coli (see paper)
    22% identity, 72% coverage of query (48.9 bits)

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory