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Searching for up to 100 curated homologs for N515DRAFT_2002 FitnessBrowser__Dyella79:N515DRAFT_2002 (420 a.a.)

Found high-coverage hits (≥70%) to 6 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

XapB / b2406 xanthosine:H+ symporter XapB from Escherichia coli K-12 substr. MG1655 (see 3 papers)
xapB / P45562 xanthosine:H+ symporter XapB from Escherichia coli (strain K12) (see 4 papers)
XAPB_ECOLI / P45562 Xanthosine permease; Xanthosine transporter from Escherichia coli (strain K12) (see 3 papers)
TC 2.A.1.10.2 / P45562 Xanthosine porter, XapB from Escherichia coli (strain K12)
    55% identity, 100% coverage of query (434 bits)

NupG / b2964 nucleoside:H+ symporter NupG from Escherichia coli K-12 substr. MG1655 (see 7 papers)
nupG / P0AFF4 nucleoside:H+ symporter NupG from Escherichia coli (strain K12) (see 20 papers)
NUPG_ECOLI / P0AFF4 Nucleoside permease NupG; Nucleoside-transport system protein NupG from Escherichia coli (strain K12) (see 7 papers)
TC 2.A.1.10.1 / P0AFF4 Nucleoside porter, NupG from Escherichia coli (see 4 papers)
nupG nucleoside permease nupG from Escherichia coli K12 (see 5 papers)
    49% identity, 100% coverage of query (390 bits)

Echvi_1845 predicted 3-ketohexose transporter from Echinicola vietnamensis KMM 6221, DSM 17526
    32% identity, 98% coverage of query (243 bits)

CA265_RS15375 predicted 3-ketohexose transporter from Pedobacter sp. GW460-11-11-14-LB5
    31% identity, 98% coverage of query (228 bits)

Build an alignment

Build an alignment for N515DRAFT_2002 and 4 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

YegT / b2098 putative transporter YegT from Escherichia coli K-12 substr. MG1655 (see 4 papers)
    28% identity, 99% coverage of query (185 bits)

CCNA_01700 predicted 3-ketohexose transporter from Caulobacter crescentus NA1000
    27% identity, 91% coverage of query (100 bits)

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory