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Searching for up to 100 curated homologs for N515DRAFT_2551 FitnessBrowser__Dyella79:N515DRAFT_2551 (111 a.a.)

Found high-coverage hits (≥70%) to 100 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

cy2 / A9CGJ2 cytochrome c2 from Agrobacterium fabrum (strain C58 / ATCC 33970) (see 2 papers)
    46% identity, 93% coverage of query (97.4 bits)

P00080 Cytochrome c2 from Rhodopila globiformis (Rhodopseudomonas globiformis)
    48% identity, 92% coverage of query (94.7 bits)

P00047 Cytochrome c from Thermomyces lanuginosus (Humicola lanuginosa)
    47% identity, 89% coverage of query (93.6 bits)

1hroA / P00080 Molecular structure of a high potential cytochrome c2 isolated from rhodopila globiformis (see paper)
    47% identity, 92% coverage of query (92.8 bits)

P00076 Cytochrome c from Euglena gracilis
    46% identity, 92% coverage of query (92.8 bits)

2yk3A / P00078 Crithidia fasciculata cytochromE C (see paper)
    44% identity, 96% coverage of query (88.6 bits)

P00078 Cytochrome c; Cytochrome c555 from Crithidia fasciculata
    44% identity, 96% coverage of query (88.6 bits)

P00077 Cytochrome c; Cytochrome c557 from Strigomonas oncopelti (Parasitic flagellate) (Crithidia oncopelti)
    46% identity, 95% coverage of query (88.6 bits)

P00038 Cytochrome c from Apis mellifera (Honeybee)
    44% identity, 90% coverage of query (88.2 bits)

4dy9A / Q4QEN5 Leishmania major peroxidase is a cytochromE C peroxidase (see paper)
    44% identity, 96% coverage of query (87.8 bits)

4gedB Crystal structure of the leishmania major peroxidase-cytochromE C complex
    45% identity, 92% coverage of query (87.8 bits)

P00069 Cytochrome c from Guizotia abyssinica (Niger) (Ramtilla)
    44% identity, 90% coverage of query (87.4 bits)

P00015 Cytochrome c, testis-specific from Mus musculus (Mouse)
    42% identity, 89% coverage of query (87.4 bits)

2aiuA / P00015 Crystal structure of mouse testicular cytochromE C at 1.6 angstrom (see paper)
    42% identity, 89% coverage of query (87.0 bits)

P00048 Cytochrome c from Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
    43% identity, 90% coverage of query (87.0 bits)

P22342 Cytochrome c from Euglena viridis (Cercaria viridis)
    43% identity, 92% coverage of query (86.3 bits)

P00074 Cytochrome c from Ginkgo biloba (Ginkgo) (Maidenhair tree)
    42% identity, 95% coverage of query (85.9 bits)

CYC1_ASCSU / P92504 Cytochrome c type-1 from Ascaris suum (Pig roundworm) (Ascaris lumbricoides) (see paper)
    43% identity, 89% coverage of query (85.5 bits)

Q0DI31 Cytochrome c from Oryza sativa subsp. japonica (Rice)
    43% identity, 94% coverage of query (85.5 bits)

P00049 Cytochrome c from Ustilago sphaerogena (Smut fungus)
    43% identity, 89% coverage of query (85.5 bits)

1ccrA / Q0DI31 Structure of rice ferricytochromE C at 2.0 angstroms resolution (see paper)
    43% identity, 94% coverage of query (85.1 bits)

P00066 Cytochrome c from Nigella damascena (Love-in-a-mist)
    40% identity, 90% coverage of query (85.1 bits)

P00054 Cytochrome c from Sesamum indicum (Oriental sesame) (Sesamum orientale)
    41% identity, 89% coverage of query (84.0 bits)

P00051 Cytochrome c from Cucurbita maxima (Pumpkin) (Winter squash)
    42% identity, 89% coverage of query (83.6 bits)

P00059 Cytochrome c from Abutilon theophrasti (Velvet-leaf) (Sida abutilon)
    43% identity, 89% coverage of query (83.6 bits)

P00070 Cytochrome c from Helianthus annuus (Common sunflower)
    41% identity, 92% coverage of query (82.8 bits)

AAB09775.1 cytochrome c from Rhodobacter sphaeroides (see paper)
    41% identity, 92% coverage of query (82.4 bits)

CYC2_DROME / P84029 Cytochrome c-2; Cytochrome c-proximal from Drosophila melanogaster (Fruit fly) (see 2 papers)
    41% identity, 90% coverage of query (82.0 bits)

P00026 Cytochrome c iso-1/iso-2 from Cyprinus carpio (Common carp)
    40% identity, 89% coverage of query (82.0 bits)

CYC_ALLPO / P00064 Cytochrome c from Allium porrum (Leek) (Allium ampeloprasum var. porrum) (see paper)
    42% identity, 95% coverage of query (81.6 bits)

8ed4I / Q2TV05 Structure of the complex between the arsenite oxidase and its native electron acceptor cytochrome c552 from pseudorhizobium sp. Str. Nt-26 (see paper)
    43% identity, 91% coverage of query (81.6 bits)

1akkA / P00004 Solution structure of oxidized horse heart cytochromE C, nmr, minimized average structure (see paper)
    40% identity, 89% coverage of query (81.6 bits)

P00028 Cytochrome c from Entosphenus tridentatus (Pacific lamprey) (Lampetra tridentata)
    41% identity, 89% coverage of query (81.6 bits)

P00004 Cytochrome c from Equus caballus (Horse)
    40% identity, 89% coverage of query (81.6 bits)

P00053 Cytochrome c from Cannabis sativa (Hemp) (Marijuana)
    42% identity, 89% coverage of query (81.6 bits)

6suvAaA Cytochrome c
    40% identity, 89% coverage of query (81.6 bits)

4rszA The x-ray structure of the primary adduct formed in the reaction between cisplatin and cytochromE C
    40% identity, 89% coverage of query (81.6 bits)

1wejF Igg1 fab fragment (of e8 antibody) complexed with horse cytochromE C at 1.8 a resolution
    40% identity, 89% coverage of query (81.6 bits)

1m60A Solution structure of zinc-substituted cytochromE C
    40% identity, 89% coverage of query (81.6 bits)

1fi7A Solution structure of the imidazole complex of cytochromE C
    40% identity, 89% coverage of query (81.6 bits)

8ed4K Structure of the complex between the arsenite oxidase and its native electron acceptor cytochrome c552 from pseudorhizobium sp. Str. Nt-26
    43% identity, 91% coverage of query (81.3 bits)

P00072 Cytochrome c from Fagopyrum esculentum (Common buckwheat) (Polygonum fagopyrum)
    40% identity, 95% coverage of query (81.3 bits)

CYC1 / GI|1373423 cytochrome c from Candida albicans (see 2 papers)
    40% identity, 94% coverage of query (80.9 bits)

P00065 Cytochrome c from Arum maculatum (Cuckoo-pint)
    41% identity, 89% coverage of query (80.9 bits)

P00067 Cytochrome c from Tropaeolum majus (Common nasturtium) (Indian cress)
    43% identity, 90% coverage of query (80.9 bits)

CYC_BOVIN / P62894 Cytochrome c from Bos taurus (Bovine) (see 2 papers)
    40% identity, 89% coverage of query (80.5 bits)

P00046 Cytochrome c from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
    40% identity, 93% coverage of query (80.5 bits)

6ff5A X-ray structure of bovine heart cytochromE C at high ionic strength
    40% identity, 89% coverage of query (80.5 bits)

P00061 Cytochrome c from Solanum tuberosum (Potato)
    41% identity, 89% coverage of query (80.1 bits)

P00073 Cytochrome c from Spinacia oleracea (Spinach)
    40% identity, 95% coverage of query (80.1 bits)

P00043 Cytochrome c from Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) (Yeast) (Torulaspora hansenii)
    40% identity, 94% coverage of query (80.1 bits)

P00071 Cytochrome c from Pastinaca sativa (Wild parsnip) (Anethum pastinaca)
    41% identity, 89% coverage of query (79.7 bits)

P00058 Cytochrome c from Gossypium barbadense (Sea-island cotton) (Egyptian cotton)
    42% identity, 89% coverage of query (79.7 bits)

P19974 Cytochrome c 2.1 from Caenorhabditis elegans
    41% identity, 90% coverage of query (79.7 bits)

P00052 Cytochrome c from Vigna radiata var. radiata (Mung bean) (Phaseolus aureus)
    40% identity, 89% coverage of query (79.7 bits)

cycA cytochrome c from Emericella nidulans (see 2 papers)
    40% identity, 89% coverage of query (79.3 bits)

CYC7_YEAST / P00045 Cytochrome c isoform 2; Iso-2-cytochrome c; Cytochrome c hypoxic isoform from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 6 papers)
    41% identity, 89% coverage of query (79.3 bits)

3cxhW / P00045 Structure of yeast complex iii with isoform-2 cytochromE C bound and definition of a minimal core interface for electron transfer. (see paper)
    41% identity, 89% coverage of query (79.3 bits)

P00012 Cytochrome c from Mirounga leonina (Southern elephant seal) (Phoca leonina)
    40% identity, 89% coverage of query (79.3 bits)

P00057 Cytochrome c from Ricinus communis (Castor bean)
    41% identity, 89% coverage of query (79.3 bits)

P00011 Cytochrome c from Canis lupus familiaris (Dog) (Canis familiaris)
    40% identity, 89% coverage of query (79.3 bits)

1yeaA Structure determination and analysis of yeast iso-2-cytochromE C and a composite mutant protein
    41% identity, 89% coverage of query (79.3 bits)

1qn2A / Q7SIA4 Cytochrome ch from methylobacterium extorquens (see paper)
    45% identity, 91% coverage of query (79.0 bits)

P00014 Cytochrome c from Macropus giganteus (Eastern gray kangaroo)
    39% identity, 89% coverage of query (79.0 bits)

P81280 Cytochrome c from Alligator mississippiensis (American alligator)
    39% identity, 89% coverage of query (79.0 bits)

CYC1_ARATH / O23138 Cytochrome c-1; Cytochrome c At1g22840 from Arabidopsis thaliana (Mouse-ear cress) (see 3 papers)
    41% identity, 89% coverage of query (78.6 bits)

P00027 Cytochrome c from Squalus suckleyi (Puget Sound dogfish) (Spinax suckleyi)
    40% identity, 89% coverage of query (78.6 bits)

5t7hA Crystal structure of dimeric yeast iso-1-cytochromE C with cymal6
    41% identity, 90% coverage of query (78.6 bits)

5kkeA Crystal structure of a domain-swapped dimer of yeast iso-1-cytochrome c with cymal5
    41% identity, 90% coverage of query (78.6 bits)

P00007 Cytochrome c from Hippopotamus amphibius (Hippopotamus)
    40% identity, 89% coverage of query (78.6 bits)

P00060 Cytochrome c from Solanum lycopersicum (Tomato) (Lycopersicon esculentum)
    41% identity, 89% coverage of query (78.6 bits)

P62773 Cytochrome c from Brassica oleracea (Wild cabbage)
    41% identity, 89% coverage of query (78.6 bits)

P62772 Cytochrome c from Brassica napus (Rape)
    41% identity, 89% coverage of query (78.6 bits)

P00037 Cytochrome c from Samia cynthia (Ailanthus silkmoth) (Phalaena cynthia)
    41% identity, 90% coverage of query (78.2 bits)

1criA The role of a conserved internal water molecule and its associated hydrogen bond network in cytochromE C
    39% identity, 90% coverage of query (77.8 bits)

1cycA / P00025 The crystal structure of bonito (katsuo) ferrocytochromE C at 2.3 angstroms resolution. Ii. Structure and function (see paper)
    38% identity, 89% coverage of query (77.4 bits)

P00068 Cytochrome c from Triticum aestivum (Wheat)
    41% identity, 89% coverage of query (77.4 bits)

1lfmA Crystal structure of cobalt(iii)-substituted cytochromE C (tuna)
    38% identity, 89% coverage of query (77.4 bits)

1i54A CytochromE C (tuna) 2fe:1zn mixed-metal porphyrins
    38% identity, 89% coverage of query (77.4 bits)

P00025 Cytochrome c from Katsuwonus pelamis (Skipjack tuna) (Bonito)
    38% identity, 89% coverage of query (77.4 bits)

P68519 Cytochrome c from Crotalus viridis viridis (Prairie rattlesnake)
    39% identity, 89% coverage of query (77.4 bits)

P68518 Cytochrome c from Crotalus atrox (Western diamondback rattlesnake)
    39% identity, 89% coverage of query (77.4 bits)

P68517 Cytochrome c from Crotalus adamanteus (Eastern diamondback rattlesnake)
    39% identity, 89% coverage of query (77.4 bits)

CYC1_YEAST / P00044 Cytochrome c isoform 1; Iso-1-cytochrome c; Cytochrome c aerobic isoform from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 10 papers)
    40% identity, 90% coverage of query (77.0 bits)

5kluA Crystal structure of a domain-swapped dimer of yeast iso-1-cytochrome c with omega-undecylenyl-beta-d-maltopyranoside
    40% identity, 89% coverage of query (77.0 bits)

3tyiA Crystal structure of cytochromE C - p-sulfonatocalix[4]arene complexes
    40% identity, 90% coverage of query (77.0 bits)

2orlA Solution structure of the cytochromE C- para-aminophenol adduct
    40% identity, 90% coverage of query (77.0 bits)

7bbtC Structure of cytochromE C in complex with a p-benzyl-sulfonato- calix[8]arene-peg pseudorotaxane
    40% identity, 90% coverage of query (77.0 bits)

6suyA Yeast cytochromE C in complex with an octa-anionic calix[4]arene
    40% identity, 90% coverage of query (77.0 bits)

6s8yA Crystal structure of cytochromE C in complex with a sulfonated quinoline-derived foldamer
    40% identity, 90% coverage of query (77.0 bits)

5lycA CytochromE C in complex with phosphonato-calix[6]arene
    40% identity, 90% coverage of query (77.0 bits)

7pr2A Cocrystal of cytochromE C and sulfonato-thiacalix[4]arene
    40% identity, 90% coverage of query (77.0 bits)

6gd6A CytochromE C in complex with sulfonato-calix[8]arene, h3 form with ammonium sulfate
    40% identity, 90% coverage of query (77.0 bits)

6egzA Crystal structure of cytochromE C in complex with di-pegylated sulfonatocalix[4]arene
    40% identity, 90% coverage of query (77.0 bits)

6egyA Crystal structure of cytochromE C in complex with mono-pegylated sulfonatocalix[4]arene
    40% identity, 90% coverage of query (77.0 bits)

5lftA Crystal structure of cytochromE C - bromo-trisulfonatocalix[4]arene complexes
    40% identity, 90% coverage of query (77.0 bits)

5kpfB Crystal structure of cytochromE C - phenyl-trisulfonatocalix[4]arene complex
    40% identity, 90% coverage of query (77.0 bits)

5ncvA Crystal structure of cytochromE C in complex with p- methylphosphonatocalix[4]arene
    40% identity, 90% coverage of query (77.0 bits)

P00063 Cytochrome c from Acer negundo (Box elder)
    41% identity, 89% coverage of query (76.6 bits)

P00079 Cytochrome c from Tetrahymena pyriformis
    43% identity, 92% coverage of query (76.6 bits)

Build an alignment

Build an alignment for N515DRAFT_2551 and 100 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory