Sites on a Tree

 

Searching for up to 100 curated homologs for NIAGMN_24555 (71 a.a.)

Found high-coverage hits (≥70%) to 4 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

TC 1.E.1.1.3 / O48430 Holin (see 2 papers)
    99% identity, 96% coverage of query (135 bits)

EssD / b0554 DLP12 prophage; putative phage lysis protein from Escherichia coli K-12 substr. MG1655 (see 4 papers)
    79% identity, 100% coverage of query (119 bits)

YdfS / b1556 Qin prophage; putative prophage lysis protein EssQ from Escherichia coli K-12 substr. MG1655 (see paper)
TC 1.E.1.1.2 / P77237 Lysis protein S from Escherichia coli (see 3 papers)
    79% identity, 100% coverage of query (119 bits)

HOLIN_BPP21 / P27360 Antiholin from Enterobacteria phage P21 (Bacteriophage 21) (Bacteriophage P21) (see 5 papers)
TC 1.E.1.1.1 / P27360 Lysis protein S; also called ''pinholin''; forms small heptameric pores that depolarize the membrane (see paper)
    76% identity, 100% coverage of query (114 bits)

Build an alignment

Build an alignment for NIAGMN_24555 and 4 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory