Sites on a Tree

 

Searching for up to 100 curated homologs for NP_662653.1 NCBI__GCF_000006985.1:NP_662653.1 (694 a.a.)

Found high-coverage hits (≥70%) to 6 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

SMc02322 rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / lactaldehyde dehydrogenase (EC 1.2.1.22) from Sinorhizobium meliloti 1021
    33% identity, 98% coverage of query (320 bits)

rhaEW / P40747 bifunctional L-rhamnulose 1-phosphate aldolase/lactaldehyde dehydrogenase (EC 4.1.2.19; EC 1.2.1.22) from Bacillus subtilis (strain 168) (see paper)
    32% identity, 99% coverage of query (317 bits)

HSERO_RS22235 rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / lactaldehyde dehydrogenase (EC 1.2.1.22) from Herbaspirillum seropedicae SmR1
    31% identity, 98% coverage of query (289 bits)

Echvi_1572 Lactaldehyde dehydrogenase (EC 1.2.1.22); Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) from Echinicola vietnamensis KMM 6221, DSM 17526
    31% identity, 98% coverage of query (278 bits)

Dshi_2436 rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / lactaldehyde dehydrogenase (EC 1.2.1.22) from Dinoroseobacter shibae DFL-12
    32% identity, 98% coverage of query (275 bits)

Build an alignment

Build an alignment for NP_662653.1 and 5 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

rhaEW / A9WGG0 bifunctional L-rhamnulose-phosphate aldolase/L-lactaldehyde dehydrogenase (EC 1.2.1.22; EC 4.1.2.19) from Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) (see paper)
    29% identity, 98% coverage of query (265 bits)

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory