Sites on a Tree

 

Searching for up to 100 curated homologs for PP_0311 FitnessBrowser__Putida:PP_0311 (650 a.a.)

Found high-coverage hits (≥70%) to 4 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

Pf6N2E2_4704 Dimethylglycine dehydrogenase (ferredoxin), FeS subunit DgcB (EC 1.5.7.-) from Pseudomonas fluorescens FW300-N2E2
    87% identity, 100% coverage of query (1160 bits)

AO353_07705 DgcB Dimethylglycine demethylase subunit B (EC 1.5.3.-) from Pseudomonas fluorescens FW300-N2E3
    87% identity, 100% coverage of query (1159 bits)

ETFFR_CHRSD / Q1QYW0 Probable membrane-anchored ferredoxin csal_0991; Transmembrane clostridial-type ferredoxin; EC 1.-.-.- from Chromohalobacter salexigens (strain ATCC BAA-138 / DSM 3043 / CIP 106854 / NCIMB 13768 / 1H11) (see paper)
    70% identity, 100% coverage of query (935 bits)

ETFQR_SYNWW / Q0AZ32 EtfAB:quinone oxidoreductase; EC 1.18.-.- from Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) (see 2 papers)
    31% identity, 83% coverage of query (262 bits)

Build an alignment

Build an alignment for PP_0311 and 4 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory