Searching for up to 100 curated homologs for PP_0414 FitnessBrowser__Putida:PP_0414 (275 a.a.)
Found high-coverage hits (≥70%) to 21 curated proteins.
You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.
TC 3.A.1.11.3 / Q44381 MotD, component of Mannopine porter from Agrobacterium tumefaciens (see paper)
39% identity, 94% coverage of query (191 bits)
TC 3.A.1.11.6 / Q1M7Q2 Putative spermidine/putrescine transport system ABC transporter permease component, component of The γ-aminobutyrate (GABA) uptake system, GtsABCD from Rhizobium leguminosarum bv. viciae (strain 3841) (see paper)
40% identity, 85% coverage of query (177 bits)
PotC / b1124 spermidine preferential ABC transporter membrane subunit PotC (EC 7.6.2.11; EC 7.6.2.16) from Escherichia coli K-12 substr. MG1655 (see 4 papers)
PotC / P0AFK6 spermidine preferential ABC transporter membrane subunit PotC (EC 7.6.2.11) from Escherichia coli (strain K12) (see 2 papers)
POTC_ECOLI / P0AFK6 Spermidine/putrescine transport system permease protein PotC from Escherichia coli (strain K12) (see paper)
TC 3.A.1.11.1 / P0AFK6 Spermidine/putrescine transport system permease protein PotC aka B1124, component of Polyamine (putrescine/spermidine) uptake porter from Escherichia coli (see 5 papers)
potC spermidine/putrescine ABC transporter, permease protein PotC from Escherichia coli K12 (see paper)
32% identity, 85% coverage of query (130 bits)
TC 3.A.1.11.4 / O70071 ChtK, component of Chrysopine porter
34% identity, 87% coverage of query (116 bits)
PotI / b0857 putrescine ABC transporter membrane subunit PotI (EC 7.6.2.11; EC 7.6.2.16) from Escherichia coli K-12 substr. MG1655 (see 2 papers)
PotI / P0AFL1 putrescine ABC transporter membrane subunit PotI (EC 7.6.2.11) from Escherichia coli (strain K12) (see paper)
POTI_ECOLI / P0AFL1 Putrescine transport system permease protein PotI from Escherichia coli (strain K12) (see 3 papers)
TC 3.A.1.11.2 / P0AFL1 PotI aka B0857, component of Putrescine porter from Escherichia coli (see 5 papers)
35% identity, 90% coverage of query (116 bits)
Build an alignment for PP_0414 and 5 homologs with ≥ 30% identity
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TC 3.A.1.11.7 / Q97Q44 Spermidine/putrescine ABC transporter, permease protein, component of The spermidine/putrescine uptake porter, PotABCD from Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
28% identity, 91% coverage of query (112 bits)
G7SFQ8 ABC-type polyamine transporter (subunit 2/4) (EC 7.6.2.11) from Streptococcus suis (see paper)
28% identity, 88% coverage of query (106 bits)
YdcV / b1443 putative ABC transporter membrane subunit YdcV from Escherichia coli K-12 substr. MG1655 (see 4 papers)
ydcV / P0AFR9 putative ABC transporter membrane subunit YdcV from Escherichia coli (strain K12) (see 4 papers)
YDCV_ECOLI / P0AFR9 Inner membrane ABC transporter permease protein YdcV from Escherichia coli (strain K12) (see 2 papers)
33% identity, 89% coverage of query (102 bits)
TC 3.A.1.6.5 / Q8U4K4 WtpB, component of Tungsten (KM=20pM)/molybdate (KM=10nM) porter from Pyrococcus furiosus (see paper)
28% identity, 81% coverage of query (78.2 bits)
TC 3.A.1.6.3 / P71745 CysT aka RV2399C aka MTCY253.22 aka MT2470, component of Sulfate porter from Mycobacterium tuberculosis (see 3 papers)
31% identity, 87% coverage of query (78.2 bits)
TC 3.A.1.20.1 / O54371 BitE, component of The iron transporter, BitABCDEF from Treponema hyodysenteriae (Serpulina hyodysenteriae) (see paper)
26% identity, 93% coverage of query (75.9 bits)
Pf1N1B4_5114 sucrose ABC transporter, permease component 2 from Pseudomonas fluorescens FW300-N1B4
28% identity, 75% coverage of query (74.7 bits)
PHNV_SALTY / P96065 Putative 2-aminoethylphosphonate transport system permease protein PhnV from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
TC 3.A.1.11.5 / P96065 PhnV aka STM0426, component of 2-aminoethyl phosphonate porter from Salmonella typhimurium (see 2 papers)
29% identity, 88% coverage of query (71.6 bits)
PGA1_c27950 N-Acetyl-D-glucosamine ABC transport system, permease component 2 from Phaeobacter inhibens BS107
29% identity, 82% coverage of query (69.3 bits)
TC 3.A.1.1.6 / Q48397 CymG, component of Cyclodextrin porter from Klebsiella oxytoca (see paper)
26% identity, 87% coverage of query (68.9 bits)
SM_b20327 ABC transporter for D-trehalose/D-maltose/sucrose, permease component 2 (ThuG) from Sinorhizobium meliloti 1021
TC 3.A.1.1.17 / Q9R9Q5 ThuG aka RB0313 aka SMB20327, component of Trehalose/maltose/sucrose porter (trehalose inducible) from Rhizobium meliloti (Sinorhizobium meliloti) (see 3 papers)
26% identity, 79% coverage of query (68.2 bits)
SMc02871 ABC transporter for N-Acetyl-D-glucosamine, permease protein 2 from Sinorhizobium meliloti 1021
28% identity, 75% coverage of query (67.0 bits)
modB / AAB60172.1 ModB from Escherichia coli (see 2 papers)
30% identity, 72% coverage of query (63.9 bits)
ModB / b0764 molybdate ABC transporter membrane subunit (EC 7.3.2.5) from Escherichia coli K-12 substr. MG1655 (see 2 papers)
ModB / P0AF01 molybdate ABC transporter membrane subunit (EC 7.3.2.5) from Escherichia coli (strain K12) (see 2 papers)
TC 3.A.1.8.1 / P0AF01 Molybdenum transport system permease protein ModB aka CHLJ aka B0764, component of Molybdate porter consisting of three proteins from Escherichia coli (see 7 papers)
modB / ECOCYC|MODB-MONOMER molybdenum transport system permease protein modB from Escherichia coli K12 (see 8 papers)
30% identity, 72% coverage of query (63.5 bits)
TC 3.A.1.20.1 / O54372 BitF, component of The iron transporter, BitABCDEF from Treponema hyodysenteriae (Serpulina hyodysenteriae) (see paper)
24% identity, 91% coverage of query (62.0 bits)
TC 3.A.1.11.7 / Q97Q43 Spermidine/putrescine ABC transporter, permease protein, component of The spermidine/putrescine uptake porter, PotABCD from Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
25% identity, 89% coverage of query (61.6 bits)
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Lawrence Berkeley National Laboratory