Sites on a Tree

 

Searching for up to 100 curated homologs for PP_1742 FitnessBrowser__Putida:PP_1742 (103 a.a.)

Found high-coverage hits (≥70%) to 5 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

Pf1N1B4_3672 small component of pyruvate transporter (yjcH-like) from Pseudomonas fluorescens FW300-N1B4
    90% identity, 100% coverage of query (194 bits)

Pf6N2E2_5848 small component of pyruvate transporter (yjcH-like) from Pseudomonas fluorescens FW300-N2E2
    86% identity, 100% coverage of query (189 bits)

PS417_08860 small component of pyruvate transporter (yjcH-like) from Pseudomonas simiae WCS417
    89% identity, 100% coverage of query (187 bits)

b4068 required for glycolate transport, with actP from Escherichia coli BW25113
YjcH / b4068 DUF485 domain-containing inner membrane protein YjcH from Escherichia coli K-12 substr. MG1655 (see 2 papers)
    60% identity, 99% coverage of query (126 bits)

AZOBR_RS02935 small component of pyruvate transporter (yjcH-like) from Azospirillum brasilense Sp245
    55% identity, 88% coverage of query (106 bits)

Build an alignment

Build an alignment for PP_1742 and 5 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory